Glyma07g37570 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g37570

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42574828
stop:	42581595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06860	AT	Annotation by Michelle Graham. TAIR10: multifunctional protein 2 \| chr3:2161926-2166009 FORWARD LENGTH=725	SoyBase	E_val: 0	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity	SoyBase	N/A	ISS
GO:0004300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enoyl-CoA hydratase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016508	GO-mf	Annotation by Michelle Graham. GO Molecular Function: long-chain-enoyl-CoA hydratase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1683	KOG	Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase	JGI		ISS
PTHR23309	Panther	3-HYDROXYACYL-COA DEHYROGENASE	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
PF00725	PFAM	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	JGI		ISS
PF02737	PFAM	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	JGI		ISS
UniRef100_B0M199	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal fatty acid beta-oxidation multifunctional protein n=1 Tax=Glycine max RepID=B0M199_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KMX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KMX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g37570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37570

Paralog	Evidence	Comments
Glyma17g03080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g246300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g37570

Limit To All Plant Sequences

>Glyma07g37570.1   sequence type=CDS   gene model=Glyma07g37570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTATATAATAAATATTTTTAAAAATCTGCGAGAGCATAAATACTTGGTTTGGAAGCAAGTTTTTCGTGCAGAGTCACCTATTCAACAGGACTTTCCGTTCACGACACTCCCTTTTATCGTTTCACTTCCGTCGTCGTCGTCTTCAATTTTGGATCTTCGAATCGAATCGCATCCTATGGGTAGCAGCAGAGGACACACGCTCATGGAGGTTGGACCCGACGGGGTTGCCGTCATCACCATCGTCAACCCTCCCGTTAATTCACTTTCCTTTGATGTATTGCGCAGTTTAAAGGAGAGTTTTGATCAGGCGATACAGAGAGATGATGTCAAGGCAATTGTTGTTACAGGTGCAAAGGGAAAATTTTCTGGAGGTTTTGATATTTCTGCATTTGGTGGTATTCAAGAGGCAAAAGAGCGTCCAAAACCTGGTTGGATATCAGTAGAAATCATCACTGATACTATTGAAGCGGCTAGGAAACCATCAGTCGCTGCCATTGATGGCCTTGCCTTGGGTGGAGGATTAGAAGTTGCAATGGCATGCAATGCTCGGTTATCAACTCCAACTGCTCAGCTAGGCTTGCCTGAACTTCAGCTTGGAATAATTCCTGGATTTGGAGGAACACAGCGACTTCCTCGTCTTGTTGGTTTGACAAAGGGACTTGAGATGATACTGGCTTCAAAACCAGTTAAAGGGAAGGAAGCTTTTAGTTTGGGGCTTGTTGATGGTTTGGTGTCACCTAATGATTTGGTGAACACTGCACGCCAATGGGCACTGGATATGTTGGGCCACCGACGACCATGGATTGCTAGTCTTTATAAGACCGAAAAATTAGAACCCCTTGGGGAAGCAAGAGAGATTTTGAAATTTGCACGAGCTCAGGCTCGAAAGAGGGCTCCTAACCTCCAGCATCCTTTGGTTTGCATTGATGTTATTGAAGCAGGAATAGTAGCTGGTCCTCGTGCAGGACTTTGGAAGGAAGCTGAAGCATTTGAAGGACTTGTAAGGTCAGATACTTGCAAAAGCTTAGTTCACGTATTTTTTGCTCAAAGAGGAACATCCAAGGTACCTGGGGTTACGGATTGTGGTCTGGCTCCAAGACAAGTCAAGAAGGTTGCCATCATTGGTGGAGGACTAATGGGCTCTGGAATAGCAACAGCTTTAATTCTTAGCAACTATCCAGTCATCTTGAAAGAAGTAAATGAGAAGTTCTTAGATGCTGGTATCAATAGGATTAAAGCAAACTTACAGAGCCGTGTAAAGAAAGGTAAATTGACCAAGGAAAATTTTGAAAAGACCATCTCTCTTCTCAAAGGTTCCCTTGACTATGAAAGCTTCAGGGATGTGGACTTGGTGATAGAGGCTGTTATTGAGAATATTTCCTTAAAGCAACAGATATTTTCTGATCTTGAAAAGTATTGTCCACCTCATTGTATACTTGCAAGTAACACTTCCACAATTGACTTGAATCTGATTGGAGAGAAGACAAAGTCTCAAGATCGAATTGTTGGAGCCCATTTCTTCAGTCCTGCACATGTTATGCCGCTTCTGGAAATTGTACGTACCAAGCAGACCTCTCCCCAAGTGATAGTTGACGTGTTAGATATTTCAAAGAAGATAAAGAAAACTCCAGTGGTGGTTGGAAACTGCACAGGATTTGCTGTTAATAGGATGTTCTTCCCATACACGCAAGCAGGTCTCTTGCTTGTTGAACGTGGTGCAGATGTTTATCAAATTGATAGAATAATAACCAAATTTGGAATGCCCATGGGGCCTTTCAGATTGGCTGACCTTGTTGGGTTTGGTGTGGCGATTGCTACTGGCACCCAATTTATTCAGAATTTTCCTGAGCGAACTTATAAATCAATGCTTATTCCACTTCTGCAAGAAGATAATAGAGCTGGCGAAACAACTCGCAAAGGGTTTTATTTGTATGATGATAAACGCAAGGCTAGTCCTGATCCTGAATTGAAGAACTATATTGAGAAGGCTAGGAGCATTTCTGGTGTCTCCGTTGATCCAAAGCTTGCCAAATTACAAGAAAAGGATATCATAGAGATGATATTCTTTCCTGTGGTGAATGAGGCTTGTCGGGTCCTTGATGAAGGTATCGCAGTCAAAGCAGCAGATCTTGATATTTCTGCTATCATGGGCATGGGTTTTCCCCCTTACAGGGGAGGCATCATATTCTGGGCTGATTCTCTTGGATCCAAGTACATATATTCAAGATTGGAGAAATGGTCAGAGTTGTATGGGGAATTCTTCAAGCCTTGTGCCTACTTGGCTGCAAGAGCTGCCAAAGGAATTCCTCTGAGTGCCTCTTTGGAGCAGCAGGCAAAGTCTCGCATGTAA

Predicted protein sequences of Glyma07g37570

Limit To All Plant Sequences

>Glyma07g37570.1   sequence type=predicted peptide   gene model=Glyma07g37570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYIINIFKNLREHKYLVWKQVFRAESPIQQDFPFTTLPFIVSLPSSSSSILDLRIESHPMGSSRGHTLMEVGPDGVAVITIVNPPVNSLSFDVLRSLKESFDQAIQRDDVKAIVVTGAKGKFSGGFDISAFGGIQEAKERPKPGWISVEIITDTIEAARKPSVAAIDGLALGGGLEVAMACNARLSTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLTKGLEMILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLGEAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKSLVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDLVIEAVIENISLKQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIVGAHFFSPAHVMPLLEIVRTKQTSPQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRIITKFGMPMGPFRLADLVGFGVAIATGTQFIQNFPERTYKSMLIPLLQEDNRAGETTRKGFYLYDDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDIIEMIFFPVVNEACRVLDEGIAVKAADLDISAIMGMGFPPYRGGIIFWADSLGSKYIYSRLEKWSELYGEFFKPCAYLAARAAKGIPLSASLEQQAKSRM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain