SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15940 | AT | Annotation by Michelle Graham. TAIR10: Fumarylacetoacetate (FAA) hydrolase family | chr4:9038361-9040163 FORWARD LENGTH=222 | SoyBase | E_val: 1.00E-121 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| KOG1535 | KOG | Predicted fumarylacetoacetate hydralase | JGI | ISS | |
| PTHR11820 | Panther | FUMARYLACETOACETATE HYDROLASE | JGI | ISS | |
| PTHR11820:SF7 | Panther | ISOMERASE-RELATED | JGI | ISS | |
| PF01557 | PFAM | Fumarylacetoacetate (FAA) hydrolase family | JGI | ISS | |
| UniRef100_Q45W70 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isomerase-like protein n=1 Tax=Arachis hypogaea RepID=Q45W70_ARAHY | SoyBase | E_val: 2.00E-145 | ISS |
| UniRef100_UPI00019AA864 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00019AA864 related cluster n=1 Tax=unknown RepID=UPI00019AA864 | SoyBase | E_val: 1.00E-161 | ISS |
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Glyma07g37530 not represented in the dataset |
Glyma07g37530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g03120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g245900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g37530.1 sequence type=CDS gene model=Glyma07g37530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTGGCAGGTTGTCAGAAGCTTCTGGAACTGAGCACCAAGATCGTCGCTGTTGGCAGAAACTACGCTGCTCACGCCAAGGAATTAGGCAACGCCGTTCCCAAGGAGCCGGTGTTGTTTCTGAAACCGACGTCGTCTTACTTGAAAAACGGCGGAACCATCCAAATCCCACACAACGAGGGCTCTCTGCATCACGAGGTTGAGCTCGCTGTGGTCATCGCCAAGAAAGCACGTGACGTCTCCGAATCCTCTGCGATGGATTATGTCGCCGGTTATGCACTGGCTCTGGATATGACTGCTAGGGACCTTCAAGCTGCTGCTAAGTCTGCAGGTCTTCCATGGAGTTTGGCAAAAGGCCAGGACACTTTCACCCCAATTAGTTCTATTTTGCCAAAGACTGCAGTGCCAAATCCTGATGATCTAGAATTATGGTTAAAGGTAGATGAGGAAATACGGCAAAAGGGCTCAACCAAGGACATGATCTTTAAGATCCCATTTCTAATTAGCTACATTAGCTCTGTCATGACATTGTTTGAAGGGGATGTCATACTAACTGGTACTCCCCCGGGTGTTGGCCCTGTCAAAGAGGGTCAAACAATTACTGCTGGCGTTACAGGCCTTGTGGACGTACAGTTTAATGTTGAAAAAAGAGCTAGGCCTGTTCTTTCTTGA
>Glyma07g37530.1 sequence type=predicted peptide gene model=Glyma07g37530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVAGCQKLLELSTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLKNGGTIQIPHNEGSLHHEVELAVVIAKKARDVSESSAMDYVAGYALALDMTARDLQAAAKSAGLPWSLAKGQDTFTPISSILPKTAVPNPDDLELWLKVDEEIRQKGSTKDMIFKIPFLISYISSVMTLFEGDVILTGTPPGVGPVKEGQTITAGVTGLVDVQFNVEKRARPVLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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