Glyma07g37420 - SoyBase

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Report for Sequence Feature Glyma07g37420

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42486074
stop:	42489550
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16760	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:5703213-5705080 FORWARD LENGTH=475	SoyBase	E_val: 1.00E-118	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF163	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9RTA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTA1_RICCO	SoyBase	E_val: 3.00E-148	ISS
UniRef100_I1KMW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMW4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g37420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37420

Paralog	Evidence	Comments
Glyma17g03210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g244900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g37420

Limit To All Plant Sequences

>Glyma07g37420.1   sequence type=CDS   gene model=Glyma07g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGATTATTTTCCAATCCACCGTAGCAGATCTCATTCATTCTTTTCTTTTCTTTCCATTCAATCACGCCCTCTCTTCCCTTCCCTTGGCGCAATGAATTCCAACTTCAATTTCGATTTCGATCTCGGCATCGGATCCAACCGTCCCAAATCCCTTAACGACCAGAAAAACCCCAAACCAACTCCCTATTCTTCCTATTCCACCACCACCACCGCTTCCTATTCCTCCTCCCAACCCAATAAACAACCTGCATGGACCCACCAACCCTCCCCCACTCAGACCACCGCCTTGCCCGGTGGCCCCCCCTCCATGGTCGGAGACATCTTCGGCAAGAGCTGGGGAACCCCTCAACCTTCTTCTGCTTCCAAAAACATCGGGATCGTCAATAAGAACCCTAACCTTTTCGGAGATTTGGTAAGTTCTGCTTTGGGCCAGGGTTCCAAGACCAACGTTCCTCTTAAAAATGCTCCCACTCCCGCGCCCAATAAATCCACCTTTTCAATGGGAAATATGGCTGATTCTTTGCCCAAAACTGGTTCCACGCCGCAGAGCAGTTCTACTTGGGCATCGTCCTCTGGGGGTTTTAATGTGAGTGCCAATAAAACCACTCTCAATCTTGGGGGTCCTTCATTGCGAAACATGGGTACTGGAATTGGAACCAATTCTAATAACAAGGATCCCTTTAGTTCTTTGTCTGGTATTGGATCCAAGCAATCTGCTACTCTTAATTCAGCTCCCAAAGGACCAAAGGTTGATTTGGGGGACGATGGTTTTGGTGATTTTCAAAATGCTTCCAAACCCAGCTCCACTGCGTTTCCATTCACTGCTTCTCCTGGAATTGATATCAATTTTACTGGATCAGGTGATAGTGGTGATCCAATGGACATGTTTTTTACGGCAACTTCCTCCTCGGCCTCTGGTGGAGGTGCTGCTGCGGCCTCTGATGGATTTGGAACACAGGATGATTGGGGTTTGGATTCGGAGTTTGGTGGGGGAGGCCATGATGTAGGTGGCACCACTACTGAGCTTGAGGGGCTGCCTCCTCCTCCTTCCGGGGTGTCAGGTTCCACTGCCAAAGGCAAAGGGATGGACAATTACAAGCAGGGGCAGTTTGCCGATGCTATTAAGTGGCTTTCGTGGGCCGTCATCCTTCTACAGAAAGCTGGGGATAGTGCGGCCACTGTCGAGGTTTTGTCGTGCAGGGCTTCGTGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTTGCAGATTGTACAAAGGTTCTTGAAAATGATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTGTTATATGAGAGTATGGAAAAGTACAGACTTGGTGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCCGGTAATAGAATTGCTAGAAGCACTGTTCACCGGTTGGCTAAGATGGCTGATTAG

Predicted protein sequences of Glyma07g37420

Limit To All Plant Sequences

>Glyma07g37420.1   sequence type=predicted peptide   gene model=Glyma07g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDYFPIHRSRSHSFFSFLSIQSRPLFPSLGAMNSNFNFDFDLGIGSNRPKSLNDQKNPKPTPYSSYSTTTTASYSSSQPNKQPAWTHQPSPTQTTALPGGPPSMVGDIFGKSWGTPQPSSASKNIGIVNKNPNLFGDLVSSALGQGSKTNVPLKNAPTPAPNKSTFSMGNMADSLPKTGSTPQSSSTWASSSGGFNVSANKTTLNLGGPSLRNMGTGIGTNSNNKDPFSSLSGIGSKQSATLNSAPKGPKVDLGDDGFGDFQNASKPSSTAFPFTASPGIDINFTGSGDSGDPMDMFFTATSSSASGGGAAAASDGFGTQDDWGLDSEFGGGGHDVGGTTTELEGLPPPPSGVSGSTAKGKGMDNYKQGQFADAIKWLSWAVILLQKAGDSAATVEVLSCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPGNRIARSTVHRLAKMAD*

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