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Report for Sequence Feature Glyma07g37311

Feature Type:gene_model
Chromosome:Gm07
Start:42416900
stop:42429160
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g37311
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11240AT Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615 SoyBaseE_val: 0ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG4547 KOG WD40 repeat-containing protein JGI ISS
PTHR22847Panther WD40 REPEAT PROTEIN JGI ISS
PTHR22847:SF201Panther OS03G0300300 PROTEIN JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF04003PFAM Dip2/Utp12 Family JGI ISS
UniRef100_G7JLK9UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD40 repeat-containing protein SMU1 n=1 Tax=Medicago truncatula RepID=G7JLK9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338AC4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338AC4 related cluster n=1 Tax=unknown RepID=UPI0002338AC4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g37311
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g37311 not represented in the dataset
Glyma07g37311 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37311
ParalogEvidenceComments
Glyma17g03310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37311 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g244100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g37311
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g37311
>Glyma07g37311.2   sequence type=transcript   gene model=Glyma07g37311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATGAGTGATCCGCAAAACTAAAATATGGACCAACTATAAAAGAAAAAGAAAAACACTTGAAAGTTGGAAGCAAGGCGAGCCGACAGGAAGCTAGCTTGTTTTGTGTTGCGAACGGGTTCCCAGTCAGCTGTTGGTTGGTTGGGGTATGGCTTCAACGGACGTCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGACTTCTTCGCTATCACCGCCGGAGACGGTCGCGTCAAGATATGGGACACACTGAAGGGTCAGGTCCACACCGAGTTCGCTGATATCACCTCAACTCATTCAACTGCTACTACCTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGAAAAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGATGTCGCTTCTGCTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACTGCTGGTGTAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAACACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGCTTTTCACTGAAGATGGGAAGTATGTCCTCTCGTCTGCTGTTGGAGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATCGAAGAACTGCGTAATGCAAAACCCACAAAAATATCCTTATCTTTAGAAGACATGCCCTCCAGAAATTACAAGGGAGCTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTAGTGCATTCTGGTGCGGACATAAAATTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGTTAAATATAAGAAGGGGACAAATGCTCAAACAGCTACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAAACTCTCTGGACAAGGATGTAATTGATGATTTCCATAGAAGTAGTAAAGATGATTCTGTTGAGATAGAAGATGATATGGCACAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCTCTAGGGATGATTTCCAGTGAAAGTGACTATGCATCAAACATTGAACTTTGCTGTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTATTCCAGTGAAAAAGATAAGAGCAGCTGTTTTGTCTATGAAGTCAACCAAAGCATGGAAGCTACTGGAAGTGTTACTGGCTGCATGGAAATCAAGGTCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGATCTCAATCACATTCCTCGGCAATATGTGACATGTACACTCAATTCCTTAGACAAGATTACCAATTTTAGAGGGGCAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTCCTGACATCACAGGTACAGTCACATTTTCTGAAATTAGTTTGGCCGTCTGTTGAATGTTAGGGGCTTTGTTAAAATTTACTTTCAGATTGAGAAGGCTTCTCAGACTATAAGCCATCCGGTGCATGAACTCCAAATGCAAGAAAGTGAAGATGAAGATGAGGATGAGGTTGAAGATGAATATTATCACGAGGAAGATGATGGTTCTGAAATGAGTACTGATGATGAAAGCTAGTCTGATTTTTTCGAGAGATTGGGTTCCAAGTTGTCTCTTTTGCGGCTGACGAAGATAGAGGAATGGAAGCTGTATTTCATCCAGCCTCTTGTTCACAATTTTGTTGCTATATAGATAGATACATCCTCAGAAAGAAACTTTGGTACTATCCAGATTTGTTAAAAATGACACGGCCCCTAATTTATGTAATTTGAGAATTTTATTAAGTAAAAATACATAAATATAGTTCGGGCATATTTACTATATGTTTGAATACATGCTCAAAATACTACGATAAAGATTTTGTATTTTCCAGATCTACAACAGCTTTGATTTCGTGATAGCAGTTTTGCATACCCCAAATTGGCCCTACACGTAGCAAGTTAATTGCCAGATATCTTTTTGCCTA
Coding sequences of Glyma07g37311
>Glyma07g37311.1   sequence type=CDS   gene model=Glyma07g37311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACGGACGTCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGACTTCTTCGCTATCACCGCCGGAGACGGTCGCGTCAAGATATGGGACACACTGAAGGGTCAGGTCCACACCGAGTTCGCTGATATCACCTCAACTCATTCAACTGCTACTACCTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGAAAAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGATGTCGCTTCTGCTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACTGCTGGTGTAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAACACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGCTTTTCACTGAAGATGGGAAGTATGTCCTCTCGTCTGCTGTTGGAGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATCGAAGAACTGCGTAATGCAAAACCCACAAAAATATCCTTATCTTTAGAAGACATGCCCTCCAGAAATTACAAGGGAGCTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTAGTGCATTCTGGTGCGGACATAAAATTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGTTAAATATAAGAAGGGGACAAATGCTCAAACAGCTACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAAACTCTCTGGACAAGGATGTAATTGATGATTTCCATAGAAGTAGTAAAGATGATTCTGTTGAGATAGAAGATGATATGGCACAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCTCTAGGGATGATTTCCAGTGAAAGTGACTATGCATCAAACATTGAACTTTGCTGTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTATTCCAGTGAAAAAGATAAGAGCAGCTGTTTTGTCTATGAAGTCAACCAAAGCATGGAAGCTACTGGAAGTGTTACTGGCTGCATGGAAATCAAGGTCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGATCTCAATCACATTCCTCGGCAATATGTGACATGTACACTCAATTCCTTAGACAAGATTACCAATTTTAGAGGGGCAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTCCTGACATCACAGATTGAGAAGGCTTCTCAGACTATAAGCCATCCGGTGCATGAACTCCAAATGCAAGAAAGTGAAGATGAAGATGAGGATGAGGTTGAAGATGAATATTATCACGAGGAAGATGATGGTTCTGAAATGAGTACTGATGATGAAAGCTAG

>Glyma07g37311.2   sequence type=CDS   gene model=Glyma07g37311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACGGACGTCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGACTTCTTCGCTATCACCGCCGGAGACGGTCGCGTCAAGATATGGGACACACTGAAGGGTCAGGTCCACACCGAGTTCGCTGATATCACCTCAACTCATTCAACTGCTACTACCTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGAAAAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGATGTCGCTTCTGCTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACTGCTGGTGTAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAACACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGCTTTTCACTGAAGATGGGAAGTATGTCCTCTCGTCTGCTGTTGGAGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATCGAAGAACTGCGTAATGCAAAACCCACAAAAATATCCTTATCTTTAGAAGACATGCCCTCCAGAAATTACAAGGGAGCTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTAGTGCATTCTGGTGCGGACATAAAATTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGTTAAATATAAGAAGGGGACAAATGCTCAAACAGCTACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAAACTCTCTGGACAAGGATGTAATTGATGATTTCCATAGAAGTAGTAAAGATGATTCTGTTGAGATAGAAGATGATATGGCACAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCTCTAGGGATGATTTCCAGTGAAAGTGACTATGCATCAAACATTGAACTTTGCTGTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTATTCCAGTGAAAAAGATAAGAGCAGCTGTTTTGTCTATGAAGTCAACCAAAGCATGGAAGCTACTGGAAGTGTTACTGGCTGCATGGAAATCAAGGTCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGATCTCAATCACATTCCTCGGCAATATGTGACATGTACACTCAATTCCTTAGACAAGATTACCAATTTTAGAGGGGCAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTCCTGACATCACAGGTACAGTCACATTTTCTGAAATTAGTTTGGCCGTCTGTTGAATGTTAG
Predicted protein sequences of Glyma07g37311
>Glyma07g37311.1   sequence type=predicted peptide   gene model=Glyma07g37311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKSSINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPGGVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLSLEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVSHDGVLLPMSQSLVKYKKGTNAQTATALDRANAEDALLPIPKVFDSHEKEKAFQNSLDKDVIDDFHRSSKDDSVEIEDDMAQSEIDVICMEDRMRSLGMISSESDYASNIELCCKLLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNHDLNHIPRQYVTCTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQIEKASQTISHPVHELQMQESEDEDEDEVEDEYYHEEDDGSEMSTDDES*

>Glyma07g37311.2   sequence type=predicted peptide   gene model=Glyma07g37311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKSSINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPGGVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLSLEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVSHDGVLLPMSQSLVKYKKGTNAQTATALDRANAEDALLPIPKVFDSHEKEKAFQNSLDKDVIDDFHRSSKDDSVEIEDDMAQSEIDVICMEDRMRSLGMISSESDYASNIELCCKLLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNHDLNHIPRQYVTCTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQVQSHFLKLVWPSVEC*






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