Glyma07g37300 - SoyBase

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Report for Sequence Feature Glyma07g37300

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42415064
stop:	42416782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56891	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:21064199-21064922 REVERSE LENGTH=166	SoyBase	E_val: 4.00E-12	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF35	Panther	PUTATIVE UNCHARACTERIZED PROTEIN P0551A11.11 (PUTA	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_I1KMV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMV4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8L4I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OJ1116_C07.8 protein n=2 Tax=Oryza sativa RepID=Q8L4I2_ORYSJ	SoyBase	E_val: 9.00E-19	ISS

Expression Patterns of Glyma07g37300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37300

Paralog	Evidence	Comments
Glyma17g03320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g244000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g37300

Limit To All Plant Sequences

>Glyma07g37300.1   sequence type=CDS   gene model=Glyma07g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGGGAGTCACAGGCACCTCGTGTCACACAGATACAGGTCCGAGTGGACTGCAACGGGTGCGTGCAGAAGATCAAAAAAGCACTAAATGGAATTCATGGTATACATGATCTTCGTGTTGACTTACTTCGACAAAAGCTCACAATTATTGGGTGGGCAGATCCAGAACAAGTTGTCAAAGCAATTAAGAAGACAAAGAAGAATGCCATCATTTGCTCTAGTTTTGAACTACCGTCTCCATCTAAACCAACTGAACCAGAACCAAAAGGAAATGCAAATGCACCAGCTCCTGATGCAACACAACCACCACCAACGCAAGCTCCACCGCCTCAACAGCCACCACCTGAAGCAACAACATCACACATACCTACATGGCACAACACAACCCGACAGTGGCAGAACAACACAGGAACAGAAGAATTAGAGCAGGTTCATGTGACACCCCATCATCTGCCTAACTACGTTAACAGATTCAGTTCTGGCCACAAACATGTTGAACACTGGTACAGATACCATAATGGTCCTATATTTCTAAAAGAGCCATCCCGACCCATGTATGTGACACACAGCTATAACACACACGTGCCTTCGTCATACGTCACTGAATATGAATATGTCAGATCACCTTCCAGATACACACATTACAATTGTATAGAACACTACAGTGGAGATTACCAGAACAACAATGTAAACATCGCATCCATGTTCAGCGATGACAATCCGAATGCATGTTGCATTGTCTAG

Predicted protein sequences of Glyma07g37300

Limit To All Plant Sequences

>Glyma07g37300.1   sequence type=predicted peptide   gene model=Glyma07g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARESQAPRVTQIQVRVDCNGCVQKIKKALNGIHGIHDLRVDLLRQKLTIIGWADPEQVVKAIKKTKKNAIICSSFELPSPSKPTEPEPKGNANAPAPDATQPPPTQAPPPQQPPPEATTSHIPTWHNTTRQWQNNTGTEELEQVHVTPHHLPNYVNRFSSGHKHVEHWYRYHNGPIFLKEPSRPMYVTHSYNTHVPSSYVTEYEYVRSPSRYTHYNCIEHYSGDYQNNNVNIASMFSDDNPNACCIV*

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