Glyma07g37240 - SoyBase

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Report for Sequence Feature Glyma07g37240

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42385094
stop:	42386145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00407	PFAM	Pathogenesis-related protein Bet v I family	JGI		ISS
UniRef100_I1KMV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMV0_SOYBN	SoyBase	E_val: 3.00E-113	ISS
UniRef100_P26987	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stress-induced protein SAM22 n=3 Tax=Glycine max RepID=SAM22_SOYBN	SoyBase	E_val: 1.00E-104	ISS

Expression Patterns of Glyma07g37240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37240

Paralog	Evidence	Comments
Glyma17g03365	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g243500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g37240

Limit To All Plant Sequences

>Glyma07g37240.2   sequence type=transcript   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACAAGGAAATTGATACCAGAGGTAGTGCTTGGCTGCTTGATTATAAATAAAGGGCACTCCTCTGCTAAAGAAGCACACAGCAGCAAGCATCTCCTTCTCAAACTAGTAGTATTATTCTTCCATTCCGTTCTACATATAATCATTCATAATGGGTGTTTTCACATTCGAGGATGAAATCAACTCCCCTGTGGCTCCTGCTACTCTTTACAAGGCCCTAGTTACAGATGCCGACAACGTCATCCCAAAGGCTCTTGATTCCTTCAAGAGTGTTGAAAACGTTGAGGGAAATGGTGGCCCAGGAACCATCAAGAAGATCACTTTCCTTGAGGATGGAGAAACCAAGTTTGTGCTGCACAAAATAGAAAGCATTGATGAGGCGAACTTGGGATACAGCTACAGCGTGGTTGGGGGTGCTGCATTGCCAGACACGGCGGAGAAGATCACATTCGACTCCAAATTGGTTGCTGGTCCCAATGGAGGGTCTGCTGGGAAGCTCACTGTCAAATACGAAACAAAAGGAGATGCTGAGCCCAACCAAGACGAACTCAAAACTGGAAAAGCCAAGGCTGATGCTCTCTTCAAGGCCATTGAGGCTTACCTTTTGGCCCATCCCGATTACAACTAATCCTCTTCAACTTACTTGTTATCACTTTCTTGCTTTTTCTTGCTTGGAGACTTATCCAATCACTCTGTGCTCAACTTAAGTTGCCTTACAATGTATCCAGTCTTTCCTTTCTTCTTTCCTTTTCCCATATAATCGTGAGACTTATGATATATCTGTGTCTCACTTCATCAATAATAAATTATAATAAAGAAGAGCAATCATTACAACTTTTGTTTCTCTTATGTTTACAACAGTGAGTTTGCATTTTTTTTCCATCTCATGTATCATA

>Glyma07g37240.3   sequence type=transcript   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACAAGGAAATTGATACCAGAGGTAGTGCTTGGCTGCTTGATTATAAATAAAGGGCACTCCTCTGCTAAAGAAGCACACAGCAGCAAGCATCTCCTTCTCAAACTAGTAGTATTATTCTTCCATTCCGTTCTACATATAATCATTCATAATGGGTGTTTTCACATTCGAGGATGAAATCAACTCCCCTGTGGCTCCTGCTACTCTTTACAAGGCTCTTGATTCCTTCAAGAGTGTTGAAAACGTTGAGGGAAATGGTGGCCCAGGAACCATCAAGAAGATCACTTTCCTTGAGGATGGAGAAACCAAGTTTGTGCTGCACAAAATAGAAAGCATTGATGAGGCGAACTTGGGATACAGCTACAGCGTGGTTGGGGGTGCTGCATTGCCAGACACGGCGGAGAAGATCACATTCGACTCCAAATTGGTTGCTGGTCCCAATGGAGGGTCTGCTGGGAAGCTCACTGTCAAATACGAAACAAAAGGAGATGCTGAGCCCAACCAAGACGAACTCAAAACTGGAAAAGCCAAGGCTGATGCTCTCTTCAAGGCCATTGAGGCTTACCTTTTGGCCCATCCCGATTACAACTAATCCTCTTCAACTTACTTGTTATCACTTTCTTGCTTTTTCTTGCTTGGAGACTTATCCAATCACTCTGTGCTCAACTTAAGTTGCCTTACAATGTATCCAGTCTTTCCTTTCTTCTTTCCTTTTCCCATATAATCGTGAGACTTATGATATATCTGTGTCTCACTTCATCAATAATAAATTATAATAAAGAAGAGCAATCATTACAACTTTTGTTTCTCTTATGTTTACAACAGTGAGTTTGCATTTTTTTTCCATCTCATGTATCATA

Coding sequences of Glyma07g37240

Limit To All Plant Sequences

>Glyma07g37240.1   sequence type=CDS   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTTTCACATTCGAGGATGAAATCAACTCCCCTGTGGCTCCTGCTACTCTTTACAAGGCCCTAGTTACAGATGCCGACAACGTCATCCCAAAGGCTCTTGATTCCTTCAAGAGTGTTGAAAACGTTGAGGGAAATGGTGGCCCAGGAACCATCAAGAAGATCACTTTCCTTGAGGCTGATGTTAATGAATGGATAGATGGAGAAACCAAGTTTGTGCTGCACAAAATAGAAAGCATTGATGAGGCGAACTTGGGATACAGCTACAGCGTGGTTGGGGGTGCTGCATTGCCAGACACGGCGGAGAAGATCACATTCGACTCCAAATTGGTTGCTGGTCCCAATGGAGGGTCTGCTGGGAAGCTCACTGTCAAATACGAAACAAAAGGAGATGCTGAGCCCAACCAAGACGAACTCAAAACTGGAAAAGCCAAGGCTGATGCTCTCTTCAAGGCCATTGAGGCTTACCTTTTGGCCCATCCCGATTACAACTAA

>Glyma07g37240.2   sequence type=CDS   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTTTCACATTCGAGGATGAAATCAACTCCCCTGTGGCTCCTGCTACTCTTTACAAGGCCCTAGTTACAGATGCCGACAACGTCATCCCAAAGGCTCTTGATTCCTTCAAGAGTGTTGAAAACGTTGAGGGAAATGGTGGCCCAGGAACCATCAAGAAGATCACTTTCCTTGAGGATGGAGAAACCAAGTTTGTGCTGCACAAAATAGAAAGCATTGATGAGGCGAACTTGGGATACAGCTACAGCGTGGTTGGGGGTGCTGCATTGCCAGACACGGCGGAGAAGATCACATTCGACTCCAAATTGGTTGCTGGTCCCAATGGAGGGTCTGCTGGGAAGCTCACTGTCAAATACGAAACAAAAGGAGATGCTGAGCCCAACCAAGACGAACTCAAAACTGGAAAAGCCAAGGCTGATGCTCTCTTCAAGGCCATTGAGGCTTACCTTTTGGCCCATCCCGATTACAACTAA

>Glyma07g37240.3   sequence type=CDS   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTTTCACATTCGAGGATGAAATCAACTCCCCTGTGGCTCCTGCTACTCTTTACAAGGCTCTTGATTCCTTCAAGAGTGTTGAAAACGTTGAGGGAAATGGTGGCCCAGGAACCATCAAGAAGATCACTTTCCTTGAGGATGGAGAAACCAAGTTTGTGCTGCACAAAATAGAAAGCATTGATGAGGCGAACTTGGGATACAGCTACAGCGTGGTTGGGGGTGCTGCATTGCCAGACACGGCGGAGAAGATCACATTCGACTCCAAATTGGTTGCTGGTCCCAATGGAGGGTCTGCTGGGAAGCTCACTGTCAAATACGAAACAAAAGGAGATGCTGAGCCCAACCAAGACGAACTCAAAACTGGAAAAGCCAAGGCTGATGCTCTCTTCAAGGCCATTGAGGCTTACCTTTTGGCCCATCCCGATTACAACTAA

Predicted protein sequences of Glyma07g37240

Limit To All Plant Sequences

>Glyma07g37240.1   sequence type=predicted peptide   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFTFEDEINSPVAPATLYKALVTDADNVIPKALDSFKSVENVEGNGGPGTIKKITFLEADVNEWIDGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPDYN*

>Glyma07g37240.2   sequence type=predicted peptide   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFTFEDEINSPVAPATLYKALVTDADNVIPKALDSFKSVENVEGNGGPGTIKKITFLEDGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPDYN*

>Glyma07g37240.3   sequence type=predicted peptide   gene model=Glyma07g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFTFEDEINSPVAPATLYKALDSFKSVENVEGNGGPGTIKKITFLEDGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPDYN*

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