SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06720 | AT | Annotation by Michelle Graham. TAIR10: importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG0166 | KOG | Karyopherin (importin) alpha | JGI | ISS | |
| PTHR23316 | Panther | IMPORTIN ALPHA-RELATED | JGI | ISS | |
| PF00514 | PFAM | Armadillo/beta-catenin-like repeat | JGI | ISS | |
| UniRef100_I1KMU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha n=1 Tax=Glycine max RepID=I1KMU3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338AC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338AC1 related cluster n=1 Tax=unknown RepID=UPI0002338AC1 | SoyBase | E_val: 0 | ISS |
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Glyma07g37180 not represented in the dataset |
Glyma07g37180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g03430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g242900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g37180.2 sequence type=CDS gene model=Glyma07g37180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGCTGGAGTTTGGTCGAATGATAATAGTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTTCCTATATTTGTCAAGCTACTCAGTTCACCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTGGTGCTCAGCCATGGTGCTCTCGTCCCACTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGGTGAGACCAGCACTTCCTGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAAGCAGGTGTATGTCCCAGATTGATGCAGCTTCTCATGCACCCATCTCCCTCGGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGTGTATTATCAATCATGGTGCACTTCCTTGCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACCATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAGTGCCGAGTTTGACATTAAAAAAGAAGCTTCTTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATCAAGTATTTGGTGAGTCAGGGTTGCGTAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAACACTGGAGATGTTAATGTGTACGCACAAATGATAGATGAAGCTGAGGGATTGGAGAAGATTGAAAACCTACAGAGTCATGACAACAATGAAATATATGAAAAGGTTGTTAAAATTCTTGAAACATATTGGTTGGAAGAAGAAGATGAGACACTACCTTCAGGAAATGGTGCTCAACCTGGTTTCAATTTCGGAAACAATGAGCTTCCCGTCCCATCTGGTGGATTCAACTTCAGCTGA
>Glyma07g37180.2 sequence type=predicted peptide gene model=Glyma07g37180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNVYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYWLEEEDETLPSGNGAQPGFNFGNNELPVPSGGFNFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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