Glyma07g37130 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g37130

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42278131
stop:	42287823
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16144	AT	Annotation by Michelle Graham. TAIR10: associated molecule with the SH3 domain of STAM 3 \| chr4:9138053-9141422 REVERSE LENGTH=507	SoyBase	E_val: 0	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0044090	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of vacuole organization	SoyBase	N/A	ISS
GO:0046907	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular transport	SoyBase	N/A	ISS
GO:0070536	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein K63-linked deubiquitination	SoyBase	N/A	ISS
GO:0071108	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein K48-linked deubiquitination	SoyBase	N/A	ISS
GO:0090316	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of intracellular protein transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2880	KOG	SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain	JGI		ISS
PTHR12947	Panther	AMSH	JGI		ISS
PTHR12947:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01398	PFAM	Mov34/MPN/PAD-1 family	JGI		ISS
UniRef100_G7JMQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: STAM-binding protein n=3 Tax=Medicago truncatula RepID=G7JMQ8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KMT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMT7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g37130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37130

Paralog	Evidence	Comments
Glyma17g03490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g242500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g37130

Limit To All Plant Sequences

>Glyma07g37130.2   sequence type=transcript   gene model=Glyma07g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACCTCACTATGTCGTTCGAAACGACAAGTTTAATTTAACGACTTGACTCACGCACGACACGGCGCTTTGATCCTTCTTCCTTCCTTGCTAGCTAGTTGATACCTTCAACTCGGAACCGTACGAGAGAGATTGAGATTTTGATTCATCGATTGGAAGCGTGTGGCGCTGGCATTCCTTCCTGGAGCGGAGAAGATGACCATCGACTTGGATTCGATCGCTCGCAGAGTCGAGGTTGATAATCGCATTCCAATCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAACTATCTACCGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCATTGCCCAACGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGGTGGAAAAAATGAATGACTCACATGTAAAAGCTCCATTCCCTGAAGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCATCTTTGGAATGGCCGGCTGTTAGTAAACAGCCTACTGCTGGATTCAGTTCACACTCTTCATGGAATTATGATAATATGTTATCTTTAGATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCTGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCTATATGATCTTGGGGCAATTAAAGATGGCGATCAAGGACCTGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGTTGGTTGCGTCCTGCTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCATCTCATGATTCTGGACTTGGTTCAACTACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCGGAAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGATCCCTGAAAAAAAGGGTATTCCATATCACAACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATGTAAGTGCTCCACTAATTTTGGCTGTTACTTATTCATTATTTTAATTATATTCATGAGTAAATGTTATTCTACCCTTGGTGGTGACAGCAAAAAACTTAATATGAAGCATTGATTTTTCGGCTTTTGTACCTCCAGAATACAAGGCTTTGATTTCTAGTAAAAGTAGTGGTCAATGAATCTTGTCTTGTGTTGCTGTCATGTTTAGAGTAGTAAGGATAAGGATTATTCATCAATGACTTGCTTTTATTTCTATTCCTGATAGAGACTTAGAATTGAACTGGTTACCCTAAAATTGTACACTATCAAATAATTTACTTAACAGTAATTTCAACATGAGTAATGTTACACAGATAACAAAATAAGGCCAGAATTTTGACAGGATTTGAGGGTGCTGTTTAATGAAATAAAGTGGTAGGGACCACTGACTCAGGTAAGAGTCAACAAGCTTGCCAAAATCATTTGGTCAGCTTTTGGCAAAATAATTCTGACTGTCACATTTTGAATTTAATGTTGCTTTGAGGAAATTAGAAAAGCATATTGAAGTGCACTTGGTGCAGCAGACGAGTTGTGGTAAGGAATTAAAGGAAGAAAATTCATCCTTTTCATTCCCTTTTCCTCCTGGGGCTTTGTGGTGTACTCTGATTCAAGATATTTAACAGAGAAAAAAAAATATAGTAAAGAATTGTATGTTACTATTTGGTCTTGGCAAAGGTTCTTCTCTTTCTGTTTCTTTTAGCTGCCACACCCTCACAAATATTTTATCTTTATCTCAAAGATGACCTTAGCTGTCTGTCTTGATTTGCTTGAGTTAGTTACTACCAAAGATCCCTTAAGCCATTACGTGCTGCTGTTTTGATGTTTGAATGCATCAATAGATTTTACTCTATCTGTAGGTATGATTGAAGATAGAAAGCTTTTTAATTCCAAGCTTACTCTA

Coding sequences of Glyma07g37130

Limit To All Plant Sequences

>Glyma07g37130.1   sequence type=CDS   gene model=Glyma07g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATCGACTTGGATTCGATCGCTCGCAGAGTCGAGGTTGATAATCGCATTCCAATCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAACTATCTACCGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCATTGCCCAACGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGGTGGAAAAAATGAATGACTCACATGTAAAAGCTCCATTCCCTGAAGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCATCTTTGGAATGGCCGGCTGTTAGTAAACAGCCTACTGCTGGATTCAGTTCACACTCTTCATGGAATTATGATAATATGTTATCTTTAGATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCTGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCTATATGATCTTGGGGCAATTAAAGATGGCGATCAAGGACCTGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGTTGGTTGCGTCCTGCTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCATCTCATGATTCTGGACTTGGTTCAACTACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCGGAAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGATCCCTGAAAAAAAGGGTATTCCATATCACAACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACACCCGTCACAGACTTGTTTCATGTCTTCTGTAGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACAAGTCCACATGGCATATTCCATCTGTCTGATCCGGGTGGTGTGTCTGTCATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTGAGGATGGGACTCCAATATATGAGCACTGTTCCCATGTCTATATGAATGCTAACTTGAAGTTCGATGTTGTTGACCTTCGAGAGCGATGA

>Glyma07g37130.2   sequence type=CDS   gene model=Glyma07g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATCGACTTGGATTCGATCGCTCGCAGAGTCGAGGTTGATAATCGCATTCCAATCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAACTATCTACCGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCATTGCCCAACGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGGTGGAAAAAATGAATGACTCACATGTAAAAGCTCCATTCCCTGAAGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCATCTTTGGAATGGCCGGCTGTTAGTAAACAGCCTACTGCTGGATTCAGTTCACACTCTTCATGGAATTATGATAATATGTTATCTTTAGATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCTGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCTATATGATCTTGGGGCAATTAAAGATGGCGATCAAGGACCTGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGTTGGTTGCGTCCTGCTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCATCTCATGATTCTGGACTTGGTTCAACTACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCGGAAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGATCCCTGAAAAAAAGGGTATTCCATATCACAACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATGTAAGTGCTCCACTAATTTTGGCTGTTACTTATTCATTATTTTAA

Predicted protein sequences of Glyma07g37130

Limit To All Plant Sequences

>Glyma07g37130.1   sequence type=predicted peptide   gene model=Glyma07g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIDLDSIARRVEVDNRIPIRYYYRIADNLLKQATIYREENNVVDLYIILLRFLSLVSETIPYHRDYQASLPNERAAYKKRSRAVLDELESLKPEFKRRVEKMNDSHVKAPFPEENGFNKALQSSVNSSLEWPAVSKQPTAGFSSHSSWNYDNMLSLDSRPIDKQFQKLSLSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHAKDSSLNQAGLYDLGAIKDGDQGPVTSTMDSVLSLDDGSWLRPAVESCSPVVTESREDPLQLLNIKQPLPPPVLAQVYPEHAPIPPSKVADPRPGPAKSSHDSGLGSTTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGTPIYEHCSHVYMNANLKFDVVDLRER*

>Glyma07g37130.2   sequence type=predicted peptide   gene model=Glyma07g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIDLDSIARRVEVDNRIPIRYYYRIADNLLKQATIYREENNVVDLYIILLRFLSLVSETIPYHRDYQASLPNERAAYKKRSRAVLDELESLKPEFKRRVEKMNDSHVKAPFPEENGFNKALQSSVNSSLEWPAVSKQPTAGFSSHSSWNYDNMLSLDSRPIDKQFQKLSLSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHAKDSSLNQAGLYDLGAIKDGDQGPVTSTMDSVLSLDDGSWLRPAVESCSPVVTESREDPLQLLNIKQPLPPPVLAQVYPEHAPIPPSKVADPRPGPAKSSHDSGLGSTTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHVSAPLILAVTYSLF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain