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Report for Sequence Feature Glyma07g36670

Feature Type:gene_model
Chromosome:Gm07
Start:42010213
stop:42011424
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17100AT Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors | chr3:5831552-5832244 FORWARD LENGTH=230 SoyBaseE_val: 5.00E-50ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006598GO-bp Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
UniRef100_G7JNY4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH148 n=1 Tax=Medicago truncatula RepID=G7JNY4_MEDTR SoyBaseE_val: 3.00E-85ISS
UniRef100_I1KMP7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMP7_SOYBN SoyBaseE_val: 2.33E-156ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g36670 not represented in the dataset

Glyma07g36670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g03930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g238300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g36670.1   sequence type=CDS   gene model=Glyma07g36670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTCGTCCTCTATGATCTCAAACCCGGTTCCGAACACGGACCGGTCACGTGACGCGAAACGGAGGAAGAAGAAAGCGCAGCTGAGGCAGCAGCAACAACGGCAAGAGGATCAGAGCAATCCCAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTGAATCTCGGGTTGGCGCCGCCGCCGCGCCGAGGCAAAGCCGTGCGCGACGCCGCCGACAGAGTCCTAGCCGTGACAGCCAAGGGGATGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACCAAACACAAGCGGCAGAGACTTACAACGCCCCCAACCCGGTCAAAGAAACCCCGGGTCAGCGTTTACCGGCTGAAGGGGAAGGGTTCACCGGGCGTGCAGAGAAAAGTGAGGTTCCTCGCACGCTTGGTTCCCGGTTGCCGTAAAGAACCGTTACCGGTTATTTTGGAAGAAGCCATTGATTACATACCCGCGCTTGAGATGCAGGTTCGAGCCATGAGCGCTCTCTTTAACCTTCTCTCTGGTTCTTCTTCTTCTTCCGGCGCCGCCGCCTCCCCTTCCGCGCCACCTAGCTCGTCATAG

>Glyma07g36670.1   sequence type=predicted peptide   gene model=Glyma07g36670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSMISNPVPNTDRSRDAKRRKKKAQLRQQQQRQEDQSNPKWKSQAQQQIYSSKLRQALARVNLGLAPPPRRGKAVRDAADRVLAVTAKGMTRWSRAILTNRLKLKFTKHKRQRLTTPPTRSKKPRVSVYRLKGKGSPGVQRKVRFLARLVPGCRKEPLPVILEEAIDYIPALEMQVRAMSALFNLLSGSSSSSGAAASPSAPPSSS*







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