Glyma07g36640 - SoyBase

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Report for Sequence Feature Glyma07g36640

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41980063
stop:	41983090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47260	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 23 \| chr2:19405045-19406446 REVERSE LENGTH=337	SoyBase	E_val: 2.00E-57	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_D9ZJG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJG1_MALDO	SoyBase	E_val: 7.00E-78	ISS
UniRef100_I1KMP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KMP6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma07g36640

Locus	Gene Symbol	Protein Name
	WRKY110	WRKY Transcription Factor

Expression Patterns of Glyma07g36640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g36640 not represented in the dataset	Glyma07g36640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36640

Paralog	Evidence	Comments
Glyma17g03950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g238000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g36640

Limit To All Plant Sequences

>Glyma07g36640.2   sequence type=transcript   gene model=Glyma07g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGGTTTTTGTTGATATATAGCACCTACAATTCATTAAAAGCAATGGAGGAGAAGAGAGAGAAAGAGGGAAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCGAACATGAGCATGAGCACAAGCTTCCCTTTCTCCCCTGCTTTCTCTAGCATCTTTGACATGATGCCACCTCCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACAACTTTGCTGGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATGCCCCTTCTTTATTCGACTGGCCCCAAAACACCACCGCCACGTCAGCACCACCACCTCTCACCGCCCAAATCAACCACCCTCTTCCGTCTCCGGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCATCTCCCAACTATTCGTCTATTTCGTCGTCGTCGAACGAAGCCGCCGCCGCCGCCGCCGCCAACAAAGCAACGGGAAATGATAATGATGTCGATGATGAAACAACAATAGATGCAGCTGCAGGCAGAGGAGAAGAAGATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCGTGCCCTGCCACGTCACGGGCTAGCCTCGGGTTCATGCATTCCGAAGCAAGTGGTGGGTTCGGACCCACTAGTGGATTAGGTTCGGCACACTTTATGCTGCCACAACAACAACAGTTTCGGGACCAAGCACAAGCAGCAATGTTGTTGTACAACTCCAACTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTACCCCAATACGTCGTCGTTGAGTGGCTTCCTTCAAGGCCAAGAGAATCATCAGCGAAGTGTGTTGGCTCCTCACGCTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTGCCAACGCATATGAGGAATGAGGAGAGTGAAGATCGTGTTTAGATACTTATGGCAGAGACTTAATGTGGGAAAGGGAAAGTCAAGAATGTAAGTTAATAAGCAATGGAGCTGGGAACTCTATCTATAATGAGGGAAATTTAAGAAAGAAAGATGAAAACTATGCATCAGAGAGTGTTATGATTGCCCCATGACTTGACACAATGCATGAGGTATGGAAAAATTGCAACATTATTACTTGTGTAGTACCCTTTAGCTTTTTGTGTATGATGCCTTTTCTCATCATCTTCCCCTATAAGCTATATACAAAGATGGGCTTCAGCCATTCAATGATGATGTGTGTTTCCTGGGAAGGAAATAGCTACAGCATGGATTGTTTCTTGATGATAGCAAAAGATGGATGATGTGAGATATTGGTGTGGAGAAAAGCATTATATATATATGGTTCTCATGCCCTAGCATAGCATACATGTTTTGTTTTGTAATACTAGCAGAAGCCATAGGCCATGCCACTATCCCTATCCCTTTGATTCATTAATTATTTGGTGTACAACCCTTTGGTGCAAAGAAAATTGGAGTTTCAAAATCTTTTATATAATTTTTGTAAAAAAATTTATATGTAATAATTATTGTAAATTTAGTTATATACATGGTTCTACAA

Coding sequences of Glyma07g36640

Limit To All Plant Sequences

>Glyma07g36640.1   sequence type=CDS   gene model=Glyma07g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGAAGAGAGAGAAAGAGGGAAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCGAACATGAGCATGAGCACAAGCTTCCCTTTCTCCCCTGCTTTCTCTAGCATCTTTGACATGATGCCACCTCCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACAACTTTGCTGGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATGCCCCTTCTTTATTCGACTGGCCCCAAAACACCACCGCCACGTCAGCACCACCACCTCTCACCGCCCAAATCAACCACCCTCTTCCGTCTCCGGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCATCTCCCAACTATTCGTCTATTTCGTCGTCGTCGAACGAAGCCGCCGCCGCCGCCGCCGCCAACAAAGCAACGGGAAATGATAATGATGTCGATGATGAAACAACAATAGATGCAGCTGCAGGCAGAGGAGAAGAAGATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCGTGCCCTGCCACGTCACGGGCTAGCCTCGGGTTCATGCATTCCGAAGCAAGTGGTGGGTTCGGACCCACTAGTGGATTAGGTTCGGCACACTTTATGCTGCCACAACAACAACAGTTTCGGGACCAAGCACAAGCAGCAATGTTGTTGTACAACTCCAACTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTACCCCAATACGTCGTCGTTGAGTGGCTTCCTTCAAGGCCAAGAGAATCATCAGCGAAGTGTGTTGGCTCCTCACGCTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTGCCAACGCATATGAGGAATGAGGAGAGTGAAGATCGTGTTTAG

>Glyma07g36640.2   sequence type=CDS   gene model=Glyma07g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGAAGAGAGAGAAAGAGGGAAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCGAACATGAGCATGAGCACAAGCTTCCCTTTCTCCCCTGCTTTCTCTAGCATCTTTGACATGATGCCACCTCCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACAACTTTGCTGGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATGCCCCTTCTTTATTCGACTGGCCCCAAAACACCACCGCCACGTCAGCACCACCACCTCTCACCGCCCAAATCAACCACCCTCTTCCGTCTCCGGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCATCTCCCAACTATTCGTCTATTTCGTCGTCGTCGAACGAAGCCGCCGCCGCCGCCGCCGCCAACAAAGCAACGGGAAATGATAATGATGTCGATGATGAAACAACAATAGATGCAGCTGCAGGCAGAGGAGAAGAAGATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCGTGCCCTGCCACGTCACGGGCTAGCCTCGGGTTCATGCATTCCGAAGCAAGTGGTGGGTTCGGACCCACTAGTGGATTAGGTTCGGCACACTTTATGCTGCCACAACAACAACAGTTTCGGGACCAAGCACAAGCAGCAATGTTGTTGTACAACTCCAACTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTACCCCAATACGTCGTCGTTGAGTGGCTTCCTTCAAGGCCAAGAGAATCATCAGCGAAGTGTGTTGGCTCCTCACGCTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTGCCAACGCATATGAGGAATGAGGAGAGTGAAGATCGTGTTTAG

Predicted protein sequences of Glyma07g36640

Limit To All Plant Sequences

>Glyma07g36640.1   sequence type=predicted peptide   gene model=Glyma07g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKREKEGNSKSSSTMANSVAFSDEIPNMSMSTSFPFSPAFSSIFDMMPPPPPSSSHDPKAPNNFAGFMDLLAVPADYYAPSLFDWPQNTTATSAPPPLTAQINHPLPSPASSNVPDGSEVLNTPASPNYSSISSSSNEAAAAAAANKATGNDNDVDDETTIDAAAGRGEEDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMHSEASGGFGPTSGLGSAHFMLPQQQQFRDQAQAAMLLYNSNSSSLSLPLNVVNSASCVNNSYPNTSSLSGFLQGQENHQRSVLAPHAFLRDNGLLQDIVPTHMRNEESEDRV*

>Glyma07g36640.2   sequence type=predicted peptide   gene model=Glyma07g36640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKREKEGNSKSSSTMANSVAFSDEIPNMSMSTSFPFSPAFSSIFDMMPPPPPSSSHDPKAPNNFAGFMDLLAVPADYYAPSLFDWPQNTTATSAPPPLTAQINHPLPSPASSNVPDGSEVLNTPASPNYSSISSSSNEAAAAAAANKATGNDNDVDDETTIDAAAGRGEEDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMHSEASGGFGPTSGLGSAHFMLPQQQQFRDQAQAAMLLYNSNSSSLSLPLNVVNSASCVNNSYPNTSSLSGFLQGQENHQRSVLAPHAFLRDNGLLQDIVPTHMRNEESEDRV*

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