Glyma07g36630 - SoyBase

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Report for Sequence Feature Glyma07g36630

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41964596
stop:	41974755
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16280	AT	Annotation by Michelle Graham. TAIR10: RNA binding;abscisic acid binding \| chr4:9207164-9214187 REVERSE LENGTH=672	SoyBase	E_val: 2.00E-172	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0040029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0000785	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromatin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0144	KOG	RNA-binding protein CUGBP1/BRUNO (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF260	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF00397	PFAM	WW domain	JGI		ISS
UniRef100_G7JNZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FCA n=1 Tax=Medicago truncatula RepID=G7JNZ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338953	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338953 related cluster n=1 Tax=unknown RepID=UPI0002338953	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g36630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36630

Paralog	Evidence	Comments
Glyma17g03960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g237900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g36630

Limit To All Plant Sequences

>Glyma07g36630.1   sequence type=CDS   gene model=Glyma07g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTACCACAGCGCTCGCCGGAGCCCCGGGGGATTCCGCTCTGGCGCTGCTCCGCACCACCGCGCCTTCGACAGTTCCCCGCGTCGCTCCCCCGGCAGGGGCGGCGGATTCCGGCCGATGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAACGGCCACCAGGCGCCGCCGCCGCTCGCTGGCCAGAAGCGAGGGTTTCCTTTCTCCGGACGCGGTGGCGGCTCGCCCGATCATTTAGATGGTGGAAATTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAAGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACTTCAGAAGAAGCTGATCAAGCAATTAGAGCATTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGGTGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATCACAGATCCTATGGGTGATCGTATGCCTCCCTCTAATGCTTGGCATCCCTTGCATCCGCCGAATATGGGGCCATCTTCTAATGCTGGTTTTCATGGCATGGGGTCACCGTTGCTTCCAAGATCTGGTGACATGGCATTGCCTACAGATGCTGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATTCCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTGTTCAGTCATCTCAGGAACTGCCACCTTCCCACCAGTTGTACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTTCTCTCTCTGCTGGTCCTCTTCCATCTCAGAAGATACATGGAGTAAGTGGACAGTTTCTAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACTCATCTTGATACCGGCATGCAATCTCATACTACATTAACTACACCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTAACAAAAAGCAGTCGCAATGGGCTGGGCCTGGGCCTGTAGCACAAACAGTGGCCAGCACTCTTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAATATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAAGGCTTCAAGTATTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTACATGAACAGCAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCACAAATCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTTGTTCCAGGCATATGGAGTTACAGGCCCCCAAAACGTGCAGGAAGTGGGATATAAGCAGTTGCAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCGCAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA

Predicted protein sequences of Glyma07g36630

Limit To All Plant Sequences

>Glyma07g36630.1   sequence type=predicted peptide   gene model=Glyma07g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYHSARRSPGGFRSGAAPHHRAFDSSPRRSPGRGGGFRPMGGEGPGEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDHLDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPMGDRMPPSNAWHPLHPPNMGPSSNAGFHGMGSPLLPRSGDMALPTDAGGPMTSLGGPIDGRFQVQSIPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLSLSAGPLPSQKIHGVSGQFLTSQPQTQQSALSAAIPQTHLDTGMQSHTTLTTPNQQQVPPSVQQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEANKKQSQWAGPGPVAQTVASTLAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLHEQQKQQQRPSVQQSQTQSQPSILPAQQVPQIQQVQPQSHLQGQVLHQQQIQQPSLSSLFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV*

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