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Report for Sequence Feature Glyma07g36610

Feature Type:gene_model
Chromosome:Gm07
Start:41949542
stop:41955807
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g36610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06580AT Annotation by Michelle Graham. TAIR10: Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496 SoyBaseE_val: 0ISS
GO:0006012GO-bp Annotation by Michelle Graham. GO Biological Process: galactose metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0046835GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate phosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004335GO-mf Annotation by Michelle Graham. GO Molecular Function: galactokinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
KOG0631 KOG Galactokinase JGI ISS
PTHR10457Panther MEVALONATE KINASE/GALACTOKINASE JGI ISS
PTHR10457:SF7Panther GALACTOKINASE 2 JGI ISS
PF00288PFAM GHMP kinases N terminal domain JGI ISS
PF08544PFAM GHMP kinases C terminal JGI ISS
PF10509PFAM Galactokinase galactose-binding signature JGI ISS
UniRef100_I1KMP3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KMP3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5ZP80UniRef Annotation by Michelle Graham. Most informative UniRef hit: Galactokinase n=1 Tax=Pisum sativum RepID=Q5ZP80_PEA SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g36610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36610
ParalogEvidenceComments
Glyma17g03990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g237700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g36610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g36610
>Glyma07g36610.1   sequence type=CDS   gene model=Glyma07g36610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGCACGAGGAGCTTCCGATCCCGATTTACAACAACCTAGAACCTGTCTATGGCGGAAGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGACATTTTGAAGTCCAAATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGATGCCGAAAAGGTTCTCAAGATCGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGGGTACAAAGGTTTCCATGACTATGCAAAATTGAAAGGAGTGGATGTTGGCAAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGGTTCTGGACTATCAAGCTCTGCAGCATTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCGAAGAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAGTGAACACACTGTCTGATGTTGAAGGGTTATGTGTATCATTTGCTGGTATTCATAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAGCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCGGCTATCTTCAAGTTTTAG
Predicted protein sequences of Glyma07g36610
>Glyma07g36610.1   sequence type=predicted peptide   gene model=Glyma07g36610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKHEELPIPIYNNLEPVYGGSSALEEAQLRFDILKSKFIDIFGHHPQIFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKNDAEKVLKIANVNGEKYSLCTYPADPLQEIDLKNHKWGHYFICGYKGFHDYAKLKGVDVGKPVGLEVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKELAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLAIKLGMDPKEAISKVNTLSDVEGLCVSFAGIHNSSDPVLAVKEYLKEEPYTAEEIEAVTGEKLTSFLNNNAAYLEVVKVAKQYKLHQRAAHVYSEAKRVHAFKDVVSSTLSDEDMLKKLGDLMNESHHSCSVLYECSCPELEELVNICRNNGALGARLTGAGWGGCAVALVKESIVPQFILNLKECFYQSRIDKGVIKKNDLGLYVFASKPSSGAAIFKF*






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