Glyma07g36600 - SoyBase

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Report for Sequence Feature Glyma07g36600

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41937990
stop:	41941182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17120	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr3:5842410-5843246 FORWARD LENGTH=219	SoyBase	E_val: 4.00E-31	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KMN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KMN9_SOYBN	SoyBase	E_val: 6.00E-178	ISS
UniRef100_Q9LSN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g17120/K14A17_24 n=1 Tax=Arabidopsis thaliana RepID=Q9LSN5_ARATH	SoyBase	E_val: 2.00E-28	ISS

Expression Patterns of Glyma07g36600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36600

Paralog	Evidence	Comments
Glyma17g04001	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g237600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g36600

Limit To All Plant Sequences

>Glyma07g36600.4   sequence type=transcript   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAGTTTGACGAAAAATCCAATCGAAAAAAGGTTATGAAAAAGTTAGAGAATAAAAACAAAAAAATAAAAATGAGAGGCAGAGATGAAATACAGAGTTGCCAACTGTCGGCGCCGCTCTGCATTGCTCCTTCCTTCCTAGTATTTTCGCTCTGTACTATAAATGTGCTGTTTTTTGAAGACATCACATGGAATGGGCTCTGGCAATGAAAAGAGAGAGAAAAAGATTTTGAATTTTAATTGAACACTTAAGATTGCAGGCAGTGACGTAGTTTCCCTGTAACGTTGTGAACTCCGTTTCTCATGCTTTTTTGTCCCTCATCGGATCTCGCCTTCTTTCTCTTCCCTTCAAGCAAGGGTCAGTCCATTCCTGGGTTTACTTTTTTTATTTTGTGATATCTTTTGTTGAGGAGGTGGATTGAGTTTAAGGATTTAGTTAAGGGAGACAGTTTAGAGGACAAAATTTTGTAGGGTAGGTAACAAGAAGGGAGAAAAGTTGGATTAGTTTTGTTTCTATCATTTGTGGGTTTGAGATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGTAATATTTGTAATATAAGTAATTCTTATCATGCATATGATATAACATTTTTTTTCCTACTCTTCTGCACTGTAACATGATAGGGGTTTAACTTTGAGATATCAATTAGTGTTGGTAATTGTTGAATTGGGTATTGTTTTGCCTTGTTCTGTTACCTTTGGATTCTGCAATTTCATTGCCATCTATACCTATTGGTTCTATTTTCTAAGCTAGGCCATTTCATATTTTGAGATCATTACTTCAGTATTATGTTTGATGATTTCCTGAA

>Glyma07g36600.5   sequence type=transcript   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAGTTTGACGAAAAATCCAATCGAAAAAAGGTTATGAAAAAGTTAGAGAATAAAAACAAAAAAATAAAAATGAGAGGCAGAGATGAAATACAGAGTTGCCAACTGTCGGCGCCGCTCTGCATTGCTCCTTCCTTCCTAGTATTTTCGCTCTGTACTATAAATGTGCTGTTTTTTGAAGACATCACATGGAATGGGCTCTGGCAATGAAAAGAGAGAGAAAAAGATTTTGAATTTTAATTGAACACTTAAGATTGCAGGCAGTGACGTAGTTTCCCTGTAACGTTGTGAACTCCGTTTCTCATGCTTTTTTGTCCCTCATCGGATCTCGCCTTCTTTCTCTTCCCTTCAAGCAAGGTATTCACTTTTCCACAATGCCTTCCTCAAGCTATTTTAAAAATTTAAACTTTATGCCTTTCTCCAATTTTCATAACTGCCCCGTTATCTTCTTAACTTCATTTCATTTTTCTTTGGCTTACTAATTAGAAGTATGATTTTTACTTTTTGTGTAACCGATTGAATTATGTTTATGTCTCTTTTTATGATGCAGGGTCAGTCCATTCCTGGGTTTACTTTTTTTATTTTGTGATATCTTTTGTTGAGGAGGTGGATTGAGTTTAAGGATTTAGTTAAGGGAGACAGTTTAGAGGACAAAATTTTGTAGGGTAGGTAACAAGAAGGGAGAAAAGTTGGATTAGTTTTGTTTCTATCATTTGTGGGTTTGAGATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGCATGTCATCTGGAAAAAGTTCAGTGACAAGTTTCCAGGGATCACCTGTACCTGCAGGACTAATGGAGGGTGGTCTGATTGATGTTCAACACCAACTCAATCCATCTTCAAGTGACCCAAATGCACCTAGTTTAGAGCCTCACAAAATTGTACAGCAGGTCACTGGTTTAGATTTGCCTGCAAAACTGAGAAGAGGTGCAGGTTAATTAATGCAAATATAGTGACACCAGCAATGTCATTGTCATATGGTATTGTGTACCCCATGTGCTTCTCATCAAAGATTTTTTTTTTTCTTGTCTTTTCAAATGTATTTCTTCATTATTATGAGATTGAATGTGTTGGGCAATTTATCCCCTGTATGTATAGTATTAGTCAATGGGTAGGGGGGTGAGTTAAATTGCTTAAGTGGTGTTGCTTGTAGTTACCTCCTCAGCAACTTCTTGTTGCATACACGTTGAAATTCAGAGTCGGAGGAGATTTTGCTTTTGAAGCTTCACGACCATATGTAATCACCTAACTAATATTATCATGTAACGATGTCTTATGATTTTCCAATTGTGATGTGAGGGAGAAAGTGAAGCCTTTCTTATGATTTTGTTGAT

>Glyma07g36600.6   sequence type=transcript   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAGTTTGACGAAAAATCCAATCGAAAAAAGGTTATGAAAAAGTTAGAGAATAAAAACAAAAAAATAAAAATGAGAGGCAGAGATGAAATACAGAGTTGCCAACTGTCGGCGCCGCTCTGCATTGCTCCTTCCTTCCTAGTATTTTCGCTCTGTACTATAAATGTGCTGTTTTTTGAAGACATCACATGGAATGGGCTCTGGCAATGAAAAGAGAGAGAAAAAGATTTTGAATTTTAATTGAACACTTAAGATTGCAGGCAGTGACGTAGTTTCCCTGTAACGTTGTGAACTCCGTTTCTCATGCTTTTTTGTCCCTCATCGGATCTCGCCTTCTTTCTCTTCCCTTCAAGCAAGGGTCAGTCCATTCCTGGGTTTACTTTTTTTATTTTGTGATATCTTTTGTTGAGGAGGTGGATTGAGTTTAAGGATTTAGTTAAGGGAGACAGTTTAGAGGACAAAATTTTGTAGGGTAGGTAACAAGAAGGGAGAAAAGTTGGATTAGTTTTGTTTCTATCATTTGTGGGTTTGAGATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGCATGTCATCTGGAAAAAGTTCAGTGACAAGTTTCCAGGGATCACCTGTACCTGCAGGACTAATGGAGGGTGGTCTGATTGATGTTCAACACCAACTCAATCCATCTTCAAGTGACCCAAATGCACCTAGTTTAGAGCCTCACAAAATTGTACAGCAGGTCACTGGTTTAGATTTGCCTGCAAAACTGAGAAGAGGTGCAGGTTAATTAATGCAAATATAGTGACACCAGCAATGTCATTGTCATATGGTATTGTGTACCCCATGTGCTTCTCATCAAAGATTTTTTTTTTTCTTGTCTTTTCAAATGTATTTCTTCATTATTATGAGATTGAATGTGTTGGGCAATTTATCCCCTGTATGTATAGTATTAGTCAATGGGTAGGGGGGTGAGTTAAATTGCTTAAGTGGTGTTGCTTGTAGTTACCTCCTCAGCAACTTCTTGTTGCATACACGTTGAAATTCAGAGTCGGAGGAGATTTTGCTTTTGAAGCTTCACGACCATATGTAATCACCTAACTAATATTATCATGTAACGATGTCTTATGATTTTCCAATTGTGATGTGAGGGAGAAAGTGAAGCCTTTCTTATGATTTTGTTGAT

Coding sequences of Glyma07g36600

Limit To All Plant Sequences

>Glyma07g36600.3   sequence type=CDS   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGCATGTCATCTGGAAAAAGTTCAGTGACAAGTTTCCAGGGATCACCTGTACCTGCAGGACTAATGGAGGGTGGTCTGATTGATGTTCAACACCAACTCAATCCATCTTCAAGTGACCCAAATGCACCTAGTTTAGAGCCTCACAAGTAA

>Glyma07g36600.4   sequence type=CDS   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGTAATATTTGTAATATAAGTAATTCTTATCATGCATATGATATAACATTTTTTTTCCTACTCTTCTGCACTGTAACATGA

>Glyma07g36600.5   sequence type=CDS   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGCATGTCATCTGGAAAAAGTTCAGTGACAAGTTTCCAGGGATCACCTGTACCTGCAGGACTAATGGAGGGTGGTCTGATTGATGTTCAACACCAACTCAATCCATCTTCAAGTGACCCAAATGCACCTAGTTTAGAGCCTCACAAAATTGTACAGCAGGTCACTGGTTTAGATTTGCCTGCAAAACTGAGAAGAGGTGCAGGTTAA

>Glyma07g36600.6   sequence type=CDS   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTAAGAGTGCCAAGGATGAGGATACTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACAGATGATGAGTCAAAGGATGTCTCTACTGAAGGTAACAGAAAACAAGGAAAGATATTACTTAATAAGATTTCTTGTGGGTTTGTTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATTCTGCAAGGAGTCAAAATTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAAAGTCCAGTAATAAGAAGTCTCCGAAGCCTCCAAGACCTCCGCGAGCTCCATCGTTGGATGCTGCTGACCAAAAGCTAATCAGGGAGATCACTGAACTTGCCATGTTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGTTGCTAAGGCATCATCATCTTCCAGTAGCAGCATGCTTGCTACGGTTTTCACTGTTGTCTTCTGTATTGTGATATTACTCCAAGGCATGTCATCTGGAAAAAGTTCAGTGACAAGTTTCCAGGGATCACCTGTACCTGCAGGACTAATGGAGGGTGGTCTGATTGATGTTCAACACCAACTCAATCCATCTTCAAGTGACCCAAATGCACCTAGTTTAGAGCCTCACAAAATTGTACAGCAGGTCACTGGTTTAGATTTGCCTGCAAAACTGAGAAGAGGTGCAGGTTAA

Predicted protein sequences of Glyma07g36600

Limit To All Plant Sequences

>Glyma07g36600.3   sequence type=predicted peptide   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSAKDEDTEVDLESGLVLTDDESKDVSTEGNRKQGKILLNKISCGFVGDCIKGEDRYSGFCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKKSSNKKSPKPPRPPRAPSLDAADQKLIREITELAMLKRARIERMKALKKMKVAKASSSSSSSMLATVFTVVFCIVILLQGMSSGKSSVTSFQGSPVPAGLMEGGLIDVQHQLNPSSSDPNAPSLEPHK*

>Glyma07g36600.4   sequence type=predicted peptide   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSAKDEDTEVDLESGLVLTDDESKDVSTEGNRKQGKILLNKISCGFVGDCIKGEDRYSGFCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKKSSNKKSPKPPRPPRAPSLDAADQKLIREITELAMLKRARIERMKALKKMKVAKASSSSSSSMLATVFTVVFCIVILLQGNICNISNSYHAYDITFFFLLFCTVT*

>Glyma07g36600.5   sequence type=predicted peptide   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSAKDEDTEVDLESGLVLTDDESKDVSTEGNRKQGKILLNKISCGFVGDCIKGEDRYSGFCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKKSSNKKSPKPPRPPRAPSLDAADQKLIREITELAMLKRARIERMKALKKMKVAKASSSSSSSMLATVFTVVFCIVILLQGMSSGKSSVTSFQGSPVPAGLMEGGLIDVQHQLNPSSSDPNAPSLEPHKIVQQVTGLDLPAKLRRGAG*

>Glyma07g36600.6   sequence type=predicted peptide   gene model=Glyma07g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSAKDEDTEVDLESGLVLTDDESKDVSTEGNRKQGKILLNKISCGFVGDCIKGEDRYSGFCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKKSSNKKSPKPPRPPRAPSLDAADQKLIREITELAMLKRARIERMKALKKMKVAKASSSSSSSMLATVFTVVFCIVILLQGMSSGKSSVTSFQGSPVPAGLMEGGLIDVQHQLNPSSSDPNAPSLEPHKIVQQVTGLDLPAKLRRGAG*

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