SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47970 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). | chr1:17687342-17688562 FORWARD LENGTH=198 | SoyBase | E_val: 3.00E-10 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1KMN5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMN5_SOYBN | SoyBase | E_val: 4.00E-107 | ISS |
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Glyma07g36560 not represented in the dataset |
Glyma07g36560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g237200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g36560.4 sequence type=transcript gene model=Glyma07g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAGCGCCGCAAAGCGAAATCACACTATCTCCGCTGAAACGCAAATGATTTTACATGGACCGTCCGATTGAGTGACACGTGATCGATCCGCGTGAAATCGTGTTTGAACGGTCGAGATCAGCGCTGCAGAGCAACTGGGGGGAAGCGAAGGGAAGAGGCTGCACAACGAATTTCGAAATCCCGTGGAGAACGTAACGTGCTCTGGTTTCTGGACTCGAAGATGAAGGCCACAAAGGAATTGAGCGAGCAAGTGGAGGAAAACGAGGTCAAGGTTTTGGTTGAGGAGGACGACGAAGAATACGAGTCCGTGGATGAAGTAGTAGACGACGCAGAAGATGATGAAGACGAAGAAGAGGACGATGACGACGACGAAGGAGACGACAATGACGACGAGGAAGATGATGCTCCTGACGGCGGTGACGACGACGACGACGAAGATGATGAAGAAGAAGGTGATGTCCAGCGTGGTGGTGAGCCTGACGATGACGATAACGACTCAGACGACGACTCAGACGACGACGAAGATGAAGACGAGGAGGACGAGGAGGAGCAAGGGGAAGAGGAGGATTTGGGAACAGAGTACCTTATCCGCCCTTTAGAAACTGCTGAGGAGGAGGAAGCATCAAGTGATTTTGAACCAGAGGAGAATGGTGAGGAGGAGGAAGAAGATGTTGACGACGAGGACTGTGAGAAGGCTGAGGCTCCACCGAAAAGAAAGAGGTCAGATAAAGATGATTCAGATGACGATGATGGAGGCGAAGACGATGAGAGACCCTCTAAGCGGTAGAGTTGGGTCCATTCTTTGCTTAAGGGCTTAAACTATAGGTTAACTTATCTCCCCTTGTCCCTTAAAAACATTTCAGGGAATTGTTTCATTTTCTCTTGCATCATTATGGTGCTACATTATTAGGCTTTATTACTTTCATGTTTGGTGCATAGTTTATAACATTTGGTAGAACAAATTTTGCAGACTTGAATGTTTTCTTTGAGCTACTTTGTAGCTCGGTATATCTCATGTTATGTATCACTATCTGTTGGTAGATTTCTTCTGCCTTTACATATTGTTTTTTTTATTTATAACAATCGTATTATTAT
>Glyma07g36560.3 sequence type=CDS gene model=Glyma07g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCCACAAAGGAATTGAGCGAGCAAGTGGAGGAAAACGAGGTCAAGGTTTTGGTTGAGGAGGACGACGAAGAATACGAGTCCGTGGATGAAGTAGTAGACGACGCAGAAGATGATGAAGACGAAGAAGAGGACGATGACGACGACGAAGGAGACGACAATGACGACGAGGAAGATGATGCTCCTGACGGCGGTGACGACGACGACGACGAAGATGATGAAGAAGAAGGTGATGTCCAGCGTGGTGGTGAGCCTGACGATGACGATAACGACTCAGACGACGACTCAGACGACGACGAAGATGAAGACGAGGAGGACGAGGAGGAGCAAGGGGAAGAGGAGGATTTGGGAACAGAGTACCTTATCCGCCCTTTAGAAACTGCTGAGGAGGAGGAAGCATCAAGTGATTTTGAACCAGAGGAGAATGGTGAGGAGGAGGAAGAAGATGTTGACGACGAGGACTGTGAGAAGGCTGAGGCTCCACCGAAAAGAAAGAGGTCAGATAAAGATGATTCAGATGACGATGATGGAGGCGAAGACGATGAGAGACCCTCTAAGCGGTAG >Glyma07g36560.4 sequence type=CDS gene model=Glyma07g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCCACAAAGGAATTGAGCGAGCAAGTGGAGGAAAACGAGGTCAAGGTTTTGGTTGAGGAGGACGACGAAGAATACGAGTCCGTGGATGAAGTAGTAGACGACGCAGAAGATGATGAAGACGAAGAAGAGGACGATGACGACGACGAAGGAGACGACAATGACGACGAGGAAGATGATGCTCCTGACGGCGGTGACGACGACGACGACGAAGATGATGAAGAAGAAGGTGATGTCCAGCGTGGTGGTGAGCCTGACGATGACGATAACGACTCAGACGACGACTCAGACGACGACGAAGATGAAGACGAGGAGGACGAGGAGGAGCAAGGGGAAGAGGAGGATTTGGGAACAGAGTACCTTATCCGCCCTTTAGAAACTGCTGAGGAGGAGGAAGCATCAAGTGATTTTGAACCAGAGGAGAATGGTGAGGAGGAGGAAGAAGATGTTGACGACGAGGACTGTGAGAAGGCTGAGGCTCCACCGAAAAGAAAGAGGTCAGATAAAGATGATTCAGATGACGATGATGGAGGCGAAGACGATGAGAGACCCTCTAAGCGGTAG
>Glyma07g36560.3 sequence type=predicted peptide gene model=Glyma07g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKATKELSEQVEENEVKVLVEEDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGEEEDLGTEYLIRPLETAEEEEASSDFEPEENGEEEEEDVDDEDCEKAEAPPKRKRSDKDDSDDDDGGEDDERPSKR* >Glyma07g36560.4 sequence type=predicted peptide gene model=Glyma07g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKATKELSEQVEENEVKVLVEEDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGEEEDLGTEYLIRPLETAEEEEASSDFEPEENGEEEEEDVDDEDCEKAEAPPKRKRSDKDDSDDDDGGEDDERPSKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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