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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06550 | AT | Annotation by Michelle Graham. TAIR10: O-acetyltransferase family protein | chr3:2039317-2042664 REVERSE LENGTH=545 | SoyBase | E_val: 0 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1699 | KOG | O-acetyltransferase | JGI | ISS | |
| PTHR13533 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13533:SF1 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07779 | PFAM | Cas1p-like protein | JGI | ISS | |
| UniRef100_G7JPZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CAS1 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JPZ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KMN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g36550 not represented in the dataset |
Glyma07g36550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g237000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g36550.2 sequence type=transcript gene model=Glyma07g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAATGAAAATAATTAAAGAGTTCCTCATAAAAAGAAATAATTAATGAGAATTTTATGACATTTTGTTTCTCTCTGCTGGACACTTGATTATTTACATCTTCTTCTTCAACACATACACGCGCAGTGAGCTCTACTCGTATCACCTACCGTCACTCGCCGCATGCAGCATTTTGCTTCCTCAAAATTCTCTTCATTCTAACTTCCATTTTCGCAAAGTTAGGAATCACTATTCCTCTCCGCTTCAGTTCCTGTGATTTCCGGTGAATCGGAGAATTCGGAACTGTGGTGTGATTCTTCTGCTGCCTCTTCTCGCTTTTCCGAAATGCTTCTCCTCAGCCCTGTTACTCCCGGTCAGGTCTCGTTCCTTCTCGGGATCATTCCAGTCGTTGTGGCATGGATATATTCGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCTAGGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCAAAGGCACGGAGCTTAACTGGCTCACCATCGATTATCCGATTCCTTTTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGATGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCGTCCAATAAGAGTTACAATAGGGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCGGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTGGGAAATCCATCCTTTACTTAAATAGGCACCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTTTGGATGACTGGATTTGGGAACTTCTCATATTATTATGTTCGTAAAGATTTTAGTCTAGCAAGATTTGCTCAGATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGTATTCTCCACAAGTACAATGAGATTGGGTCGGTCATTGCGGTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTAGTATGGGAGATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACTTTCTTTCTCGGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGCTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAGGTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTACCCAGCAAAGACGACAAACGCTTTATACACAATTTAATTACAGCAACAACAATCTCAGTTGTTTTATATTCTTTGTCTCTCGGCTTCCTTAGGGTACCTCAAATGTTGGTTTGAAAATTGAATTATGTATATATATACTGTTGCAAGCTACCTGTGGACTCGGAAGAATTCTGGGCAGTTGCTACAATTGGTTTGTCAGGCCAACTCTTTACCGAAAGATGCATTCATCTCTTTTTTGTAAGTTACAGAAGTAATAACTTGTACCAAAAAAAAGAAGCAAAAATAGGTCAATAGCATGCAGTTTTAGGGGGTTGAAAGTTGTATAGATATAAGAGGGTGGGCGCATGGCATCACATTTTTTTTTTTTATATTATGCAACCTCATTTTTTGTTTTGTTAGTGGTCTAAAATGATCACGCCTATATCACCATCTACTATATTATGTTAAATAGTAGATGAAACTTAGTTATGAGAAGGAACTATAAATTTTGCTAGTTTGTCACTATATAAACTGCCTTTTGATTACCGAAAGTTGTTCCGGCAGCTCAATAGGGTTAAGCATGCGTCTAGGCTTTGGAATACTTCTATTAACTTAGAAAACCTCGACTAGCTGGTGGCACATTCAAGCTTATATTATTTCCTTATGTTGGGAGTCTGGGACAAGTTATTACTGCTGGCTAATTGGCTAAGACCAATATGTTGTAGTAGGAAATTATGTATGGTTCTCGACATTAAAAAGAGTATATTATTTGAAACCTACATTCAGTGTTTAATAAATACAAATTTAGGTGCCA
>Glyma07g36550.1 sequence type=CDS gene model=Glyma07g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCTCCTCAGCCCTGTTACTCCCGGTCAGGTCTCGTTCCTTCTCGGGATCATTCCAGTCGTTGTGGCATGGATATATTCGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCAAAGGCACGGAGCTTAACTGGCTCACCATCGATTATCCGATTCCTTTTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGATGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCGTCCAATAAGAGTTACAATAGGGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCGGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTGGGAAATCCATCCTTTACTTAAATAGGCACCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTTTGGATGACTGGATTTGGGAACTTCTCATATTATTATGTTCGTAAAGATTTTAGTCTAGCAAGATTTGCTCAGATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGTATTCTCCACAAGTACAATGAGATTGGGTCGGTCATTGCGGTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTAGTATGGGAGATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACTTTCTTTCTCGGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGCTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAGGTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTACCCAGCAAAGACGACAAACGCTTTATACACAATTTAATTACAGCAACAACAATCTCAGTTGTTTTATATTCTTTGTCTCTCGGCTTCCTTAGGGTACCTCAAATGTTGGTTTGA >Glyma07g36550.2 sequence type=CDS gene model=Glyma07g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCTCCTCAGCCCTGTTACTCCCGGTCAGGTCTCGTTCCTTCTCGGGATCATTCCAGTCGTTGTGGCATGGATATATTCGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCTAGGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCAAAGGCACGGAGCTTAACTGGCTCACCATCGATTATCCGATTCCTTTTGATGGATGAGTGTTTCCTTCTTGAGAACCGTTTGACACTTAGAGCGATGTCTGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCGTCCAATAAGAGTTACAATAGGGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCGGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTGGGAAATCCATCCTTTACTTAAATAGGCACCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTTTGGATGACTGGATTTGGGAACTTCTCATATTATTATGTTCGTAAAGATTTTAGTCTAGCAAGATTTGCTCAGATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGTATTCTCCACAAGTACAATGAGATTGGGTCGGTCATTGCGGTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTAGTATGGGAGATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACTTTCTTTCTCGGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGCTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAGGTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTACCCAGCAAAGACGACAAACGCTTTATACACAATTTAATTACAGCAACAACAATCTCAGTTGTTTTATATTCTTTGTCTCTCGGCTTCCTTAGGGTACCTCAAATGTTGGTTTGA
>Glyma07g36550.1 sequence type=predicted peptide gene model=Glyma07g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLLSPVTPGQVSFLLGIIPVVVAWIYSEILEYRKNSVSSRAQSDINLVEMGSDVVKDEDRAVLLEGGALQSGSPKARSLTGSPSIIRFLLMDECFLLENRLTLRAMSEFGLILAYFYLCDRTDFFASSNKSYNRDLFLFLYFLLIIVSAMTSFKIHHDKSPLSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEIYNAIRLFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVVFCCIVLNNSYMLYYICPMHTLFTLMVYGALGILHKYNEIGSVIAVKIIACFLVVILVWEIPGVFEWVWSPFTFFLGYTDPNPAKSHLSRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEAEIKRRISIKATVVLICSLVGYLWFEHIYKLDKIAYNKYHPYTSWIPITVYICLRNVTQSFRSYTLTLFAWLGKITLETYISQIHIWLRSGVPDGQPKLLLSLIPDFPMLNFMLTTSIYVAISYRLFDLTNTLKMAFVPSKDDKRFIHNLITATTISVVLYSLSLGFLRVPQMLV* >Glyma07g36550.2 sequence type=predicted peptide gene model=Glyma07g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLLSPVTPGQVSFLLGIIPVVVAWIYSEILEYRKNSVSSRARQSDINLVEMGSDVVKDEDRAVLLEGGALQSGSPKARSLTGSPSIIRFLLMDECFLLENRLTLRAMSEFGLILAYFYLCDRTDFFASSNKSYNRDLFLFLYFLLIIVSAMTSFKIHHDKSPLSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEIYNAIRLFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVVFCCIVLNNSYMLYYICPMHTLFTLMVYGALGILHKYNEIGSVIAVKIIACFLVVILVWEIPGVFEWVWSPFTFFLGYTDPNPAKSHLSRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEAEIKRRISIKATVVLICSLVGYLWFEHIYKLDKIAYNKYHPYTSWIPITVYICLRNVTQSFRSYTLTLFAWLGKITLETYISQIHIWLRSGVPDGQPKLLLSLIPDFPMLNFMLTTSIYVAISYRLFDLTNTLKMAFVPSKDDKRFIHNLITATTISVVLYSLSLGFLRVPQMLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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