Glyma07g36500 - SoyBase

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Report for Sequence Feature Glyma07g36500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41873775
stop:	41877834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17180	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 33 \| chr3:5855861-5859157 REVERSE LENGTH=478	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G3KLG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Grain size 5 n=1 Tax=Oryza sativa Indica Group RepID=G3KLG7_ORYSI	SoyBase	E_val: 0	ISS
UniRef100_I1KMN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMN0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g36500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36500

Paralog	Evidence	Comments
Glyma17g04120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g236600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g36500

Limit To All Plant Sequences

>Glyma07g36500.4   sequence type=CDS   gene model=Glyma07g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAAAATGAATGTTATTCTGTGCCTCCAGTTCCTATGTTTCTTTCTTTTGAGTACTTGGTTCATTAAAGCATCTGCAATAAATCTGGAAACATATGAATCTGATAGAATAATTGATCTTCCTGGCCAACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACTGTCAATGAAAACCATGGGAGGGAACTTTTCTACTGGTTCTTTGAAGCTCAATCTGAACCCTCCAAGAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTGTTGGGTATGGCGCAGTTGTTGAGATTGGACCTCTTATAGTCAACAAAAATGGGGAAGGACTACATTTCAACACATACTCCTGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGAGTTGGGTTTTCTTATACTAACACATCTTCTGATCTCACCATATTAGAGGATAATTTTGTGGCTAAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCCGGGACTTTTTTATATCAGGAGAAAGCTATGGTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAATAAAGATGGGAGCAAATACCCCTTTATTAATCTTAAAGGTTTTATTGTAGGGAACCCAAAGACTGATGATTACTATGACTATAAAGGCCTTCTGGAATATGCATGGAGCCACGCGGTTATATCAGACCAGCAATACGACAAAGCAAAACAATTATGTGATTTTAAACAATTTGAATGGTCTAATGAATGCAACAAGGCCATGAATGAAGTGTTCCAAGATTACTTAGAAATTGACATATACAACATTTATGCCCCGGCATGTCTTCTAAACAGCACATCCTCAATAGCTGATGATGGCGACAGTAACGGCCCTGAATCATTAACTAAGGAGAGAAATGATTATAGACTAAAGAGGATGAGAATTTTTGGGGGCTATGATCCTTGTTATTCCAATTATGCAGAAGAATACTTCAATAGAAAAGATGTTCAGTCATCTTTTCATGCAGATACTAAAAGAGACACTAACGTAGCATGGAAGGTGTGCAATAATTCCATATTGCGGACTTACAACTTCTCTGTTTTCTCGGTCCTACCTGTCTACACTAAACTCATCAAAGGTGGCCTTAAGATTTGGATTTACAGTGGAGATGCAGATGGAAGAATACCGGTGATAGGGACACGATATTGCGTTGAGGCTCTGGGATTACCTCTCAAGTCTAGGTGGCGAACTTGGTACCATGATAATCAGGTTGGAGGAAGAATAGTTGAATACGAAGGTCTGACATATGTGACAGTGAGAGGAGCAGGTCACTTGGTGCCACTGAACAAGCCCAGTGAGGCTCTCTCTCTAATTCATTCTTTCTTAACAGAAGAACATCTTCCTACTCGTGGATAA

Predicted protein sequences of Glyma07g36500

Limit To All Plant Sequences

>Glyma07g36500.4   sequence type=predicted peptide   gene model=Glyma07g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMKMNVILCLQFLCFFLLSTWFIKASAINLETYESDRIIDLPGQPSSPSVSHFSGYITVNENHGRELFYWFFEAQSEPSKKPLLLWLNGGPGCSSVGYGAVVEIGPLIVNKNGEGLHFNTYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDNFVAKDAYNFLVNWLQRFPQFKSRDFFISGESYGGHYIPQLAELIFDRNKDGSKYPFINLKGFIVGNPKTDDYYDYKGLLEYAWSHAVISDQQYDKAKQLCDFKQFEWSNECNKAMNEVFQDYLEIDIYNIYAPACLLNSTSSIADDGDSNGPESLTKERNDYRLKRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHADTKRDTNVAWKVCNNSILRTYNFSVFSVLPVYTKLIKGGLKIWIYSGDADGRIPVIGTRYCVEALGLPLKSRWRTWYHDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLTEEHLPTRG*

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