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Report for Sequence Feature Glyma07g36480

Feature Type:gene_model
Chromosome:Gm07
Start:41871115
stop:41871522
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g36480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09610AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF579) | chr1:3111789-3112637 FORWARD LENGTH=282 SoyBaseE_val: 1.00E-25ISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045491GO-bp Annotation by Michelle Graham. GO Biological Process: xylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0030775GO-mf Annotation by Michelle Graham. GO Molecular Function: glucuronoxylan 4-O-methyltransferase activity SoyBaseN/AISS
PF04669PFAM Protein of unknown function (DUF579) JGI ISS
UniRef100_B3VV42UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein (Fragment) n=1 Tax=Populus tremula RepID=B3VV42_POPTN SoyBaseE_val: 1.00E-25ISS
UniRef100_C6TKB9UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TKB9_SOYBN SoyBaseE_val: 7.00E-29ISS

Expression Patterns of Glyma07g36480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g36480 not represented in the dataset
Glyma07g36480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g36480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g236400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g36480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g36480
>Glyma07g36480.1   sequence type=CDS   gene model=Glyma07g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCTCAGGGTGATCTCCAACTTCTTAAGCCAATGTCATCGTGTTTCCTTGAAGGAGTTTAATACTGGCAGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCCCGGCGTGTAGATGTACTATGTTACAGGATATATTTGAGCTACAGGCTTGTGGATGTGACAGCAAGAGTTCTGGAGAAGAAGTCGCCGTGCAATTTCTTGGTGTTCGGGTTGGGGCACGACGGCCTGATGTGGAACGCGCTGAATCACGGGGGAAGGACGATATTCCTGGAAGAAGAAGAGTCATGGATTCAGCAAATGAGAAGATTTCCAATGATGGAGTGA
Predicted protein sequences of Glyma07g36480
>Glyma07g36480.1   sequence type=predicted peptide   gene model=Glyma07g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILRVISNFLSQCHRVSLKEFNTGRCWKKQLNIAKDARRVDVLCYRIYLSYRLVDVTARVLEKKSPCNFLVFGLGHDGLMWNALNHGGRTIFLEEEESWIQQMRRFPMME*






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