Glyma07g36130 - SoyBase

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Report for Sequence Feature Glyma07g36130

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41528170
stop:	41529722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17350	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:5934111-5935276 FORWARD LENGTH=301	SoyBase	E_val: 1.00E-114	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KMJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMJ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LUT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAD32889.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LUT6_ARATH	SoyBase	E_val: 3.00E-110	ISS

Expression Patterns of Glyma07g36130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36130

Paralog	Evidence	Comments
Glyma17g04290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g233600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g36130

Limit To All Plant Sequences

>Glyma07g36130.1   sequence type=CDS   gene model=Glyma07g36130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATGCAGCTATTCACCATCTTCAAACTCCTTATACTAACACTATTATTTCAGCTACAAGTCACTCCCACTCTCACACTCTCCCCTTGCAAAACCTCATGTGGCAACATTCCTATAAATTACCCCTTTGGCCTAGAAGATGGATGTGGTGCACCCCAGTTCAGACACATGCTAAACTGCAGCACCGACTTGTTCTTTCAAACCCCTTCAGGTTCTTACAAAGTCCAATCCATCGACTATGACAAAAAAACCATGGTAATCTATGACCCTTCAATGTCCACCTGCTCCATTCTCCAACCTCACCACGACTTCGAAATGACCCAAGTTCAATCCGCCATAATCCCCCCATCACAGGACACAGTTTTCGTGCTGCTAAACTGCTCCATAGACTCTCCCGTTCTAAACCACTACAAGTACCTCTGCTTCAACTTCGCCGGTCACACGTGTGACGAGCTTTATGGTTCGTGCAACGCCTTCAGGGTCTTTCATTTGCTGACAAACAGTTCTCCACCGTGTTGTTTCACCAGTTATAGCACCGTGAAGTTCATGAGCATGAACATATTGGACTGCACGCACTATACCAGTGTGTTTAACACGGATAATTTGAAGGGTGTTGGCCCTTTGGACTGGGTTTATGGGATCAAGCTTTCTTTCAGTGTGCCTGATACTGGATGTCAAAGTTGCAAAGAATCTGGTGGGACATGTGGCTTTGATACTGATACGGAAGGTTTGCTTTGTCTTTGCTCAAGTTTCGCTAATTCAACAAGGGAATGTGCTGCTGGAAGCATAATATCAAAAGGACAGAACAATGCTCCTTGGACACACTTCCTACTGGTTTTGCTTGTTGTAGCTAATTTTCTCACGAAAGTGAGGCTCGTTTGA

Predicted protein sequences of Glyma07g36130

Limit To All Plant Sequences

>Glyma07g36130.1   sequence type=predicted peptide   gene model=Glyma07g36130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMQLFTIFKLLILTLLFQLQVTPTLTLSPCKTSCGNIPINYPFGLEDGCGAPQFRHMLNCSTDLFFQTPSGSYKVQSIDYDKKTMVIYDPSMSTCSILQPHHDFEMTQVQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFAGHTCDELYGSCNAFRVFHLLTNSSPPCCFTSYSTVKFMSMNILDCTHYTSVFNTDNLKGVGPLDWVYGIKLSFSVPDTGCQSCKESGGTCGFDTDTEGLLCLCSSFANSTRECAAGSIISKGQNNAPWTHFLLVLLVVANFLTKVRLV*

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