Glyma07g36030 - SoyBase

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Report for Sequence Feature Glyma07g36030

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41416021
stop:	41418810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g36030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G30490	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). \| chr5:11612199-11614271 FORWARD LEN	SoyBase	E_val: 4.00E-63	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4776	KOG	Uncharacterized conserved protein BCNT	JGI		ISS
PTHR23227	Panther	BUCENTAUR RELATED	JGI		ISS
PF07572	PFAM	Bucentaur or craniofacial development	JGI		ISS
UniRef100_B9RZW6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Craniofacial development protein, putative n=1 Tax=Ricinus communis RepID=B9RZW6_RICCO	SoyBase	E_val: 2.00E-78	ISS
UniRef100_I1KMJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g36030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g36030

Paralog	Evidence	Comments
Glyma17g04200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g36030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g232800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g36030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g36030

Limit To All Plant Sequences

>Glyma07g36030.1   sequence type=CDS   gene model=Glyma07g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCGCCGATACCGTCAATGCGAGTTCTGCTGAGTCTGTCAAAGAACCTGTCATAGGGTCAAGTCTGGAAGCAAAACAGGATGATACTGAAATAAAATCTCAAGTTGATGCCATGTGGGAACAAATGAATAAAGGAGTATCTAATAAGACCCTCAACAGATTTACAAGCAAGCCTAATTCTGCTCCAAAAAAAACTGCAAAGAAGACATCATCTAACTGGATGTCTTATTTGGCCTTGGCACCGAAGGCAACTGAATCCCTTGGGCAAGGTGCTTCCAAGAATGGACCTGGCATTCTGCAGAGCAGTACAAGTGATGAAGCCAAGAAGCTTGCTGCTGCTGCTCTTGCAGCAGTGAAAGATGATGCTGCCATGGCTGCCTCAAGCAGGGGGAAACTTGTGATTACTGAGGTTCGGGACTTTGCTGGTCAAGAAATTGAAGTTAAAAAGCTTGTAGATTCTGACTCAAAGGAGGCAATGGAAAGAGCCAAAGCTCCTCCACCTTCTGCAGTGGATACTGTCCTTGAACAAATCAAGAAGAAACAGAAGCTCAGTGTACTGGATAAGACCAAAAAGGACTGGGGTGAATTTAAGGAAGAAAAGAGACTGGAAGAAGAGCTTGATGCTTATAAGAAGAGTTCTAACCAGTATTTGGACAAGGTTTCTTTCTTACAGCGAGCAGATTACCGTGAGTTTGAGCGTGAGAGAGATGCGCGACTGGCTTTGCAATCCAGGAAGCGACCAGATAATATGCAAGAGGATGACTGA

Predicted protein sequences of Glyma07g36030

Limit To All Plant Sequences

>Glyma07g36030.1   sequence type=predicted peptide   gene model=Glyma07g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSADTVNASSAESVKEPVIGSSLEAKQDDTEIKSQVDAMWEQMNKGVSNKTLNRFTSKPNSAPKKTAKKTSSNWMSYLALAPKATESLGQGASKNGPGILQSSTSDEAKKLAAAALAAVKDDAAMAASSRGKLVITEVRDFAGQEIEVKKLVDSDSKEAMERAKAPPPSAVDTVLEQIKKKQKLSVLDKTKKDWGEFKEEKRLEEELDAYKKSSNQYLDKVSFLQRADYREFERERDARLALQSRKRPDNMQEDD*

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