SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g36021): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g36021): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g36021

Feature Type:gene_model
Chromosome:Gm07
Start:41403654
stop:41408331
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g36021
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19473AT Annotation by Michelle Graham. TAIR10: RPM1-interacting protein 4 (RIN4) family protein | chr5:6569268-6570680 FORWARD LENGTH=99 SoyBaseE_val: 3.00E-12ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05627PFAM Cleavage site for pathogenic type III effector avirulence factor Avr JGI ISS
UniRef100_F4K158UniRef Annotation by Michelle Graham. Most informative UniRef hit: RPM1-interacting protein 4 (RIN4) family protein n=1 Tax=Arabidopsis thaliana RepID=F4K158_ARATH SoyBaseE_val: 2.00E-09ISS
UniRef100_I3STR9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3STR9_LOTJA SoyBaseE_val: 4.00E-27ISS

Expression Patterns of Glyma07g36021
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g36021 not represented in the dataset
Glyma07g36021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g36021 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g232600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g36021
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g36021
>Glyma07g36021.1   sequence type=CDS   gene model=Glyma07g36021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGCAAGGGGAAAAAGCCTGTTAAGATGTCCGTGCCTCAATTTGGAGGGTGGGAACACAAGCCCGCGGGAGTGCCTACTGACTACTCTATGGTGTTCAACCAAGCTCGTGAAAAAAAGAAGACTCAAATGAATGATTTGACTGAAGTCAAACGTCTAAGTCTTGGGAATGAAAGGGATGCCCTAAAACCCAATCATCGTCGTGGGCATGGTCAAGGACATGGGCATGGGCATGGGCATGGGCATGGACATGGACATGGACATGGGCATGGGCTTGATCATGAAGATCCTCCCGTTATGAGGAGAAAGATGGTTCTGAATTACATGAATTGCTTTAAGCCTTGA
Predicted protein sequences of Glyma07g36021
>Glyma07g36021.1   sequence type=predicted peptide   gene model=Glyma07g36021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERKGKKPVKMSVPQFGGWEHKPAGVPTDYSMVFNQAREKKKTQMNDLTEVKRLSLGNERDALKPNHRRGHGQGHGHGHGHGHGHGHGHGHGLDHEDPPVMRRKMVLNYMNCFKP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo