Glyma07g35750 - SoyBase

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Report for Sequence Feature Glyma07g35750

Feature Type:	gene_model
Chromosome:	Gm07
Start:	41079558
stop:	41083445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g35750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02960	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr2:862346-863980 REVERSE LENGTH=271	SoyBase	E_val: 3.00E-102	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1609	KOG	Protein involved in mRNA turnover and stability	JGI		ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF12428	PFAM	Protein of unknown function (DUF3675)	JGI		ISS
UniRef100_B9S8W6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9S8W6_RICCO	SoyBase	E_val: 9.00E-131	ISS
UniRef100_I1KMH5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KMH5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g35750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g35750

Paralog	Evidence	Comments
Glyma20g04870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g35750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g230100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g35750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g35750

Limit To All Plant Sequences

>Glyma07g35750.2   sequence type=transcript   gene model=Glyma07g35750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGACATCATCTTTTCCAAAATGACCATAATGTCTCTTTCTAGTTTCTCCGTTCCAAAATTCCAACAACATATTTTAATTCCACAAAGCCACCAACAAAACAAAACGAAGCCCATTACCAACACCACCTTCCCTATATATTCGCCCAACGCCATTTTACACACATTTCTCTCTCTCTCTTCCTTGTTTCTCGCTCAAGCCTTTCTCTCTTTCTAACAAGTTACAAATAAAAGTTCCCCTTTTTCTCCGGTGAGTCTCTCAGATACCCTCATTTTCTCGGGATCCGCCGATTCACCGTGCGATCCCGGGGTTTCTTCTTTTTTTTCTTCTTCAACCCCTTCTTCCATTTCCTCTTCCTTCTTCTTCTTCTTCTTCCCCCCCCCCCCCCCCTCCCCCACCCCTTTTTTCCTTTTCAATTTTCAATTTTTTATTCGAAAAAAAATAAAAAAATACAAAAAAATAGGATCAATGAACGATCATCTGGTGCTGTTCGTGGACCATCTGGTGCGGCCCGTGCCGGTGGTCGAGCCGCTGGCCCAACAACCCCCCGAGCCCGTGACGCCCGTCAATGAGGCCGCGGTGGCGGGTCCCTCCGGGTCGTCTCCGTCTGCGGAGGACGACGGAGACGACGACGGGGAGGACGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGATTTGGAGACCCCCTGCTCCTGCAGTGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGTCCTATGAACCTGGTTATACTGCCCCGCCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGACTTGCGTGATACCCGGCTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCATTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGAAGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAAATTCTCATGGTTTTCATGTTACGGTGAAACAGGAAGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAAACCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGGACCAGGACCACCAACAATGAATACACACCAACCGGAACAAGTGTAATTTTTGTATGCCACCAGTGTATGTAACAAGGCTTGTTGGAATGCCATGCATTTTTTTACTCATGATTTTTCTGAGCTCTAATTTACATACATAGCTTGAGAGACTTTGAGATGGTACTTAATATTCTAGGGTCCTTAAACCCTCAAAAAGAACCGCTCATTTTGTTGTATTGCAGTTTCAAAGTCTTTGAAAGTTATAGCAATGTTAATTCTACTAGAAAGTTAGCATGTCATTCCATAGGGATAAGGTTGTGTCCGTGCCTGTTTTCCTGCACCGTAATAATCATGATTGAAGCAAACGCAAACGGTAGAAGAATTTGACAAGAGTTTTTGCATTAATTTGAGCACGAGAATGTCCCATCTGTCTTCGGTGCTTGTTGGCCATCCATTTTGGTTTGTTTCCAAATTGTATTGACTTCTCCAATAGCGACATTGCATCGTTCAGACTAAAATAGTTTTTAGAAGTCGTTTCTATTTAATTCCTCACCCAGTAGATGCAATATAGGAAGCCTCTCGAAATCAATAAGCAAATTGATCATTGATGAACTTTCGAGTTACAATTACA

Coding sequences of Glyma07g35750

Limit To All Plant Sequences

>Glyma07g35750.1   sequence type=CDS   gene model=Glyma07g35750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGATCATCTGGTGCTGTTCGTGGACCATCTGGTGCGGCCCGTGCCGGTGGTCGAGCCGCTGGCCCAACAACCCCCCGAGCCCGTGACGCCCGTCAATGAGGCCGCGGTGGCGGGTCCCTCCGGGTCGTCTCCGTCTGCGGAGGACGACGGAGACGACGACGGGGAGGACGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGATTTGGAGACCCCCTGCTCCTGCAGTGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGTCCTATGAACCTGGTTATACTGCCCCGCCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGACTTGCGTGATACCCGGCTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCATTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGAAGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAAGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAAACCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGGACCAGGACCACCAACAATGAATACACACCAACCGGAACAAGTGTAA

>Glyma07g35750.2   sequence type=CDS   gene model=Glyma07g35750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGATCATCTGGTGCTGTTCGTGGACCATCTGGTGCGGCCCGTGCCGGTGGTCGAGCCGCTGGCCCAACAACCCCCCGAGCCCGTGACGCCCGTCAATGAGGCCGCGGTGGCGGGTCCCTCCGGGTCGTCTCCGTCTGCGGAGGACGACGGAGACGACGACGGGGAGGACGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGATTTGGAGACCCCCTGCTCCTGCAGTGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGTCCTATGAACCTGGTTATACTGCCCCGCCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGACTTGCGTGATACCCGGCTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCATTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGAAGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAAATTCTCATGGTTTTCATGTTACGGTGA

Predicted protein sequences of Glyma07g35750

Limit To All Plant Sequences

>Glyma07g35750.1   sequence type=predicted peptide   gene model=Glyma07g35750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDHLVLFVDHLVRPVPVVEPLAQQPPEPVTPVNEAAVAGPSGSSPSAEDDGDDDGEDAPLLQLAECRICQEEDSVSDLETPCSCSGSLKYAHRKCVQRWCNEKGDIICEICHKSYEPGYTAPPPRPQPEETTIDIGGGWTISGMPLDLRDTRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSEAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQTGQRRGLQFAIGPGPPTMNTHQPEQV*

>Glyma07g35750.2   sequence type=predicted peptide   gene model=Glyma07g35750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDHLVLFVDHLVRPVPVVEPLAQQPPEPVTPVNEAAVAGPSGSSPSAEDDGDDDGEDAPLLQLAECRICQEEDSVSDLETPCSCSGSLKYAHRKCVQRWCNEKGDIICEICHKSYEPGYTAPPPRPQPEETTIDIGGGWTISGMPLDLRDTRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSEAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEILMVFMLR*

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