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Report for Sequence Feature Glyma07g35490

Feature Type:gene_model
Chromosome:Gm07
Start:40668096
stop:40671410
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26690AT Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214 SoyBaseE_val: 3.00E-106ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008320GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity SoyBaseN/AISS
KOG1691 KOG emp24/gp25L/p24 family of membrane trafficking proteins JGI ISS
PTHR22811Panther COPII-COATED VESICLE MEMBRANE PROTEIN JGI ISS
PTHR22811:SF5Panther EMP24/GP25L-RELATED JGI ISS
PF01105PFAM emp24/gp25L/p24 family/GOLD JGI ISS
UniRef100_B9S912UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane emp24 domain-containing protein 10, putative n=1 Tax=Ricinus communis RepID=B9S912_RICCO SoyBaseE_val: 1.00E-116ISS
UniRef100_I1KMF6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMF6_SOYBN SoyBaseE_val: 5.00E-164ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g35490 not represented in the dataset

Glyma07g35490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g03930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g228100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g35490.1   sequence type=CDS   gene model=Glyma07g35490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGATGATGATGATGGGTTCAAACACAAAACCCCTTGTGCACCTTTCTCTTCTAATTTTGGTTCTCTTTTCTTCTTCAACCGAATCCCTCAGATTCGAACTCCAATCTGGGCACACCAAATGCATCTCCGAGGACATCAAGAGCAATTCCATGACCGTGGGCAAGTACCAAATTGTTAACTCCAACGAGGGTCAGCCTCTTCCCGATTCCCACAGAGTCACCGTCAGGGTGACTTCGTCTTATGGGAACAACTATCACTACGGGGATCGCGTTCAGACGGGGCATTTTGCGTTTGCGGCAGTGGAGGCTGGAGATTACATGACTTGCTTTTGGGCTGTGGATCACAACCCTGTGGAAACGTTGACTGTGGATTTTGATTGGAAAACGGGTGTTGCAGCCAAGGATTGGTCTAATGTTGCTAAAAAAGGCCAAGTTGATGTAATGGAGCTAGAGCTAAAGAAGTTGCAGGATACTGTTTCCTCCATTCATGAGGAGATGTTTTATCTTCGTGAAAGAGAAGAAGAAATGCAGGAACTCAACAGAACAACCAACAGCAGAATGTTCTGGTTGAGTTTGCTTTCGCTCTTTGTCTGTTTATCCGTAGCAGGGATGCAACTATGGCACTTGAAGACCTTCTTCGAGAAAAAGAAACTTATTTAA

>Glyma07g35490.1   sequence type=predicted peptide   gene model=Glyma07g35490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMMMMMGSNTKPLVHLSLLILVLFSSSTESLRFELQSGHTKCISEDIKSNSMTVGKYQIVNSNEGQPLPDSHRVTVRVTSSYGNNYHYGDRVQTGHFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDWSNVAKKGQVDVMELELKKLQDTVSSIHEEMFYLREREEEMQELNRTTNSRMFWLSLLSLFVCLSVAGMQLWHLKTFFEKKKLI*







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