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Report for Sequence Feature Glyma07g35381

Feature Type:gene_model
Chromosome:Gm07
Start:40532555
stop:40536935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G03340AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 3 | chr2:1014724-1016936 REVERSE LENGTH=513 SoyBaseE_val: 7.00E-131ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G7JWM9UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=18 Tax=rosids RepID=G7JWM9_MEDTR SoyBaseE_val: 1.00E-168ISS
UniRef100_I1NDJ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDJ8_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY109 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g35381 not represented in the dataset

Glyma07g35381 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g03410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g227200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g35381.1   sequence type=CDS   gene model=Glyma07g35381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGAGAAAATGGGGAACATGTATTTTTATTTTTTCTTTCCACCCGTATCAGAGGGGTGGACTTTTTGCTGAAATCGAGAGTTGAGATCCACGAAACCCAAAAATCAAACCAACTAACCAACCAGAATCATCGTATAACAACAAAAAGGTTTGATACTTTTTCATTAGAGTTTCAGTTTAGTTTCCAGACAAGAAAGGCACAGAGAAAAGAGAGAGAAACGAAAAACAAAAAGAAGAAAAAGTTGAAGTCTTTGGTTCATTCGAAGTGGATGGTTGGCGGTAGAAATGGAGAGGGAGCAGGAGAGCAAGCACCGCCACCCTCGACGGCGGCGCGTCACGGAACCACTCTCCGGCCACGCGTCTCCACGGAGAGCGTTTTCAGCTGCAGGTATGGTGGCCTCGGTCCCATGACTCTGCTTTCGAGCTTCTTCGGCGACGGCGATGAGTGCAAGTCGTTCTCGGAGCTCCTCGGCGGCGCCATGGTGGACCCCACCGCACCCTCGCCCATGCCCACCACCCCGTTCACCCTTCCACATGGGTTCATCGATTCACCTTCTCCTCAAGGTCAATTTGGAATGACACACCAGCAGATGCTAGCACAGATCACATCTCAGGCTGTGCCAGCCCACTTCAATGTGCAAATTCACTCTGAACATCCATTCTCTATATCAGCAGTGTCTGCTACCTCTTTGACACAGTTTCCTACAGGATCCAGTACTAGGGTGAAAGAATCCCTTCATTATTCTCACTCTGAACAAAAATTGCAGTCTTCTTCTGTGAATGCTGATAAGCCTAATGATGATGGCTACAATTGGAGGAAGTATGGGCAAAAACATGTGAAAGGTAGAGACTTCTCAAGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTCAAGAAAAAACTTGAGCGTTCTCTTGAAGGTCATGTGACTGCAATTATCTATAAAGGAGAGCACAATCATCAACGTCCTCATCCCAATAAGATCACGAAAGAAACACAGACTTCGAATATAAATTCAGTGTCTAAGATGGATCTAGAATCTAGTCAGGCAACAGGTGAACATGGGTCAGGAACAAGTGATAGTGAGGAAGTAGGTGATCATGAAAGTGAAGAAGATGAGAAAAATGATGAACCTGATGCCAAGAGAAGAAACACAGAAGTCAGGCTCCAGGATCCAGCCTCTTTACATAGAACTGTAGCAGAGACTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTAGATGATGGATATCGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGTGCAACCCAAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCAATGGATCCTAAAGCTGTCCTAACAACATACGAAGGAAAACACAATCATGATGTGCCGGTAGCTAAGACTAATAGCCACACACTTGCCAACAATAGTGCATCACAGCTAAAAGCACAAAATATTGCCATACCCGACGACAAGCATAGTTTCAGCAGTAGGGGTGTTCGGGGGAATGAACAGCGACCTTTGGGAAGTCTAAGATTGAAGGAAGAGCAGATAACATAG

>Glyma07g35381.1   sequence type=predicted peptide   gene model=Glyma07g35381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRENGEHVFLFFLSTRIRGVDFLLKSRVEIHETQKSNQLTNQNHRITTKRFDTFSLEFQFSFQTRKAQRKERETKNKKKKKLKSLVHSKWMVGGRNGEGAGEQAPPPSTAARHGTTLRPRVSTESVFSCRYGGLGPMTLLSSFFGDGDECKSFSELLGGAMVDPTAPSPMPTTPFTLPHGFIDSPSPQGQFGMTHQQMLAQITSQAVPAHFNVQIHSEHPFSISAVSATSLTQFPTGSSTRVKESLHYSHSEQKLQSSSVNADKPNDDGYNWRKYGQKHVKGRDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHPNKITKETQTSNINSVSKMDLESSQATGEHGSGTSDSEEVGDHESEEDEKNDEPDAKRRNTEVRLQDPASLHRTVAETRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCATQGCNVRKHVERASMDPKAVLTTYEGKHNHDVPVAKTNSHTLANNSASQLKAQNIAIPDDKHSFSSRGVRGNEQRPLGSLRLKEEQIT*







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