SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03510 | AT | Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr2:1066717-1068934 FORWARD LENGTH=356 | SoyBase | E_val: 0 | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2962 | KOG | Prohibitin-related membrane protease subunits | JGI | ISS | |
| PTHR15351 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01145 | PFAM | SPFH domain / Band 7 family | JGI | ISS | |
| UniRef100_G7JHI5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Erlin-2 n=1 Tax=Medicago truncatula RepID=G7JHI5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KMD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMD0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma07g35210 not represented in the dataset |
Glyma07g35210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g03070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g225600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g35210.2 sequence type=transcript gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCCAAATTCATTTTCGTATCCCAAACAAACCGCAAAGCATAAAGGACATACTCGTAACTCTACTATAAAAAATTTATAAAAAGAGAAAAAAAAATTCTCCACCGCCATGGATTTGCAGCAACGAACAACGGCTTCTCCTCTGTCGCCGCCGCCGCCGGCGCGACAAAGCCACGATTCCACCTCCATTCTCTTCACCTTCCTCTCGTTCTTCGCCATTGTCGCTCTGGTACCTGTCCCTCAATCTCGGCTTCTTTTCCCGCTTCTCGATAAACGACAACAACGCCTCAGTTCATTGCACCTTCGTTATTTCGTGTCGTTTGGTAACAGATAGTGTCGTAGAACTGCAATGGCGTTGCGCTGAATCTCATTCGTGTTTTGCTTCCTTCAGCGTCACCATCCTTCCAAAATAGCTTATCCATTCTGCACCAAGTCCCTGAAGGCCATGTGGGGGTATATTGGAGAGGAGGTGCCCTTCTGAAAACAATTACAGAGCCAGGCTTCCATCTAAAGATGCCTTTTATAACTCAGTATGAACCTGTTCAAGTTACACTTCAAACAGATATGGTGATAGATATACCCTGTGGTACTAAAGGTGGTGTTATGATCAGTTTTGGGAAGATTGAGGTTGTGAATCAACTCCATAAGGAATTTGTCTTTGAGACATTGCTCAACTATGGTGTACATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATTAATCAGTTCTGCAGTTCTCATTCTCTGCAACAAGTCTATATTGATGTCTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGTTGACTGCACTCGCTATGCTCCAGGAATTGAGATCTTAAGTGTCCGTGTCACAAAGCCAACTATTCCAGAAAGCATAAGACGCAATTTCGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATAGCTATTGAGAAACAGAAAGTATCCGAGAAGGAGGCAGAGACTATGAAGAAGATGGCCATTAGTGAGGCCGAGAAGAATGCCAATGTTAGCAAGATCCTTATGGAGCAAAAATTATTGGAAAAGGATAGTGCTAGACGACAAGAAGAAATAGAGAATGCAATGTACCTGGCACGTGAAAAGAGCCTGGCAGATGCAGACTTCTACCGTGTAATAAAGGAAGCTGAAGCAAACAGGTTGAAGCTCACCCCTGAATTTCTTCAGCTTAAATTTATTCAGGCCATTGCTAATAATACGAAGATTTTCTTTGGAGATAAGGTTCCTAATATGATTTTGGATCAGAGGCTGCTTGGGAACTTACTTCATGATGTTTCTAGAGGGAGAACTACAACGGCCAAAGCAGATATCTGAATTATTCTTAGATGTCAGAGGTCTGAGCTCAGATGACTCAAAATGCATTACCAATATTTTGGAGGAGTTATATCTTCGTAGTTATCTTTACACAATGAGAATGAAACAAGTTTACAAATTTCCTTGTGTGGGGAGCATGTAGATAATAGGTGGTCCCTTTTGATGTAGTGGAAACTGGAACACTCATTACACAATCAGAGATCAACTGTTACATCTAGGCATAAAGGACGCAACATATCAGCTTCTTGTTAAGTCGTTACATTTTCCTCTTATACGTATTATATTTGTAATGGATTTAGATAAAACGCTATGCGTTGAAAAATTATTTACCTTCAGATCAAAATTACGACTTTACAAAGAAACTGGGATTGCTTTAAGGTGGTGAGG >Glyma07g35210.3 sequence type=transcript gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCCAAATTCATTTTCGTATCCCAAACAAACCGCAAAGCATAAAGGACATACTCGTAACTCTACTATAAAAAATTTATAAAAAGAGAAAAAAAAATTCTCCACCGCCATGGATTTGCAGCAACGAACAACGGCTTCTCCTCTGTCGCCGCCGCCGCCGGCGCGACAAAGCCACGATTCCACCTCCATTCTCTTCACCTTCCTCTCGTTCTTCGCCATTGTCGCTCTGGTTTTGCTTCCTTCAGCGTCACCATCCTTCCAAAATAGCTTATCCATTCTGCACCAAGTCCCTGAAGGCCATGTGGGGGTATATTGGAGAGGAGGTGCCCTTCTGAAAACAATTACAGAGCCAGGTGATAGATATACCCTGTGGTACTAAAGGTGGTGTTATGATCAGTTTTGGGAAGATTGAGGTTGTGAATCAACTCCATAAGGAATTTGTCTTTGAGACATTGCTCAACTATGGTGTACATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATTAATCAGTTCTGCAGTTCTCATTCTCTGCAACAAGTCTATATTGATGTCTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGTTGACTGCACTCGCTATGCTCCAGGAATTGAGATCTTAAGTGTCCGTGTCACAAAGCCAACTATTCCAGAAAGCATAAGACGCAATTTCGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATAGCTATTGAGAAACAGAAAGTATCCGAGAAGGAGGCAGAGACTATGAAGAAGATGGCCATTAGTGAGGCCGAGAAGAATGCCAATGTTAGCAAGATCCTTATGGAGCAAAAATTATTGGAAAAGGATAGTGCTAGACGACAAGAAGAAATAGAGAATGCAATGTACCTGGCACGTGAAAAGAGCCTGGCAGATGCAGACTTCTACCGTGTAATAAAGGAAGCTGAAGCAAACAGGTTGAAGCTCACCCCTGAATTTCTTCAGCTTAAATTTATTCAGGCCATTGCTAATAATACGAAGATTTTCTTTGGAGATAAGGTTCCTAATATGATTTTGGATCAGAGGCTGCTTGGGAACTTACTTCATGATGTTTCTAGAGGGAGAACTACAACGGCCAAAGCAGATATCTGAATTATTCTTAGATGTCAGAGGTCTGAGCTCAGATGACTCAAAATGCATTACCAATATTTTGGAGGAGTTATATCTTCGTAGTTATCTTTACACAATGAGAATGAAACAAGTTTACAAATTTCCTTGTGTGGGGAGCATGTAGATAATAGGTGGTCCCTTTTGATGTAGTGGAAACTGGAACACTCATTACACAATCAGAGATCAACTGTTACATCTAGGCATAAAGGACGCAACATATCAGCTTCTTGTTAAGTCGTTACATTTTCCTCTTATACGTATTATATTTGTAATGGATTTAGATAAAACGCTATGCGTTGAAAAATTATTTACCTTCAGATCAAAATTACGACTTTACAAAGAAACTGGGATTGCTTTAAGGTGGTGAGG
>Glyma07g35210.1 sequence type=CDS gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGCAGCAACGAACAACGGCTTCTCCTCTGTCGCCGCCGCCGCCGGCGCGACAAAGCCACGATTCCACCTCCATTCTCTTCACCTTCCTCTCGTTCTTCGCCATTGTCGCTCTGGTTTTGCTTCCTTCAGCGTCACCATCCTTCCAAAATAGCTTATCCATTCTGCACCAAGTCCCTGAAGGCCATGTGGGGGTATATTGGAGAGGAGGTGCCCTTCTGAAAACAATTACAGAGCCAGGCTTCCATCTAAAGATGCCTTTTATAACTCAGTATGAACCTGTTCAAGTTACACTTCAAACAGATATGGTGATAGATATACCCTGTGGTACTAAAGGTGGTGTTATGATCAGTTTTGGGAAGATTGAGGTTGTGAATCAACTCCATAAGGAATTTGTCTTTGAGACATTGCTCAACTATGGTGTACATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATTAATCAGTTCTGCAGTTCTCATTCTCTGCAACAAGTCTATATTGATGTCTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGTTGACTGCACTCGCTATGCTCCAGGAATTGAGATCTTAAGTGTCCGTGTCACAAAGCCAACTATTCCAGAAAGCATAAGACGCAATTTCGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATAGCTATTGAGAAACAGAAAGTATCCGAGAAGGAGGCAGAGACTATGAAGAAGATGGCCATTAGTGAGGCCGAGAAGAATGCCAATGTTAGCAAGATCCTTATGGAGCAAAAATTATTGGAAAAGGATAGTGCTAGACGACAAGAAGAAATAGAGAATGCAATGTACCTGGCACGTGAAAAGAGCCTGGCAGATGCAGACTTCTACCGTGTAATAAAGGAAGCTGAAGCAAACAGGTTGAAGCTCACCCCTGAATTTCTTCAGCTTAAATTTATTCAGGCCATTGCTAATAATACGAAGATTTTCTTTGGAGATAAGGTTCCTAATATGATTTTGGATCAGAGGCTGCTTGGGAACTTACTTCATGATGTTTCTAGAGGGAGAACTACAACGGCCAAAGCAGATATCTGA >Glyma07g35210.2 sequence type=CDS gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTTTATAACTCAGTATGAACCTGTTCAAGTTACACTTCAAACAGATATGGTGATAGATATACCCTGTGGTACTAAAGGTGGTGTTATGATCAGTTTTGGGAAGATTGAGGTTGTGAATCAACTCCATAAGGAATTTGTCTTTGAGACATTGCTCAACTATGGTGTACATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATTAATCAGTTCTGCAGTTCTCATTCTCTGCAACAAGTCTATATTGATGTCTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGTTGACTGCACTCGCTATGCTCCAGGAATTGAGATCTTAAGTGTCCGTGTCACAAAGCCAACTATTCCAGAAAGCATAAGACGCAATTTCGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATAGCTATTGAGAAACAGAAAGTATCCGAGAAGGAGGCAGAGACTATGAAGAAGATGGCCATTAGTGAGGCCGAGAAGAATGCCAATGTTAGCAAGATCCTTATGGAGCAAAAATTATTGGAAAAGGATAGTGCTAGACGACAAGAAGAAATAGAGAATGCAATGTACCTGGCACGTGAAAAGAGCCTGGCAGATGCAGACTTCTACCGTGTAATAAAGGAAGCTGAAGCAAACAGGTTGAAGCTCACCCCTGAATTTCTTCAGCTTAAATTTATTCAGGCCATTGCTAATAATACGAAGATTTTCTTTGGAGATAAGGTTCCTAATATGATTTTGGATCAGAGGCTGCTTGGGAACTTACTTCATGATGTTTCTAGAGGGAGAACTACAACGGCCAAAGCAGATATCTGA >Glyma07g35210.3 sequence type=CDS gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAGTTTTGGGAAGATTGAGGTTGTGAATCAACTCCATAAGGAATTTGTCTTTGAGACATTGCTCAACTATGGTGTACATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATTAATCAGTTCTGCAGTTCTCATTCTCTGCAACAAGTCTATATTGATGTCTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGTTGACTGCACTCGCTATGCTCCAGGAATTGAGATCTTAAGTGTCCGTGTCACAAAGCCAACTATTCCAGAAAGCATAAGACGCAATTTCGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATAGCTATTGAGAAACAGAAAGTATCCGAGAAGGAGGCAGAGACTATGAAGAAGATGGCCATTAGTGAGGCCGAGAAGAATGCCAATGTTAGCAAGATCCTTATGGAGCAAAAATTATTGGAAAAGGATAGTGCTAGACGACAAGAAGAAATAGAGAATGCAATGTACCTGGCACGTGAAAAGAGCCTGGCAGATGCAGACTTCTACCGTGTAATAAAGGAAGCTGAAGCAAACAGGTTGAAGCTCACCCCTGAATTTCTTCAGCTTAAATTTATTCAGGCCATTGCTAATAATACGAAGATTTTCTTTGGAGATAAGGTTCCTAATATGATTTTGGATCAGAGGCTGCTTGGGAACTTACTTCATGATGTTTCTAGAGGGAGAACTACAACGGCCAAAGCAGATATCTGA
>Glyma07g35210.1 sequence type=predicted peptide gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLQQRTTASPLSPPPPARQSHDSTSILFTFLSFFAIVALVLLPSASPSFQNSLSILHQVPEGHVGVYWRGGALLKTITEPGFHLKMPFITQYEPVQVTLQTDMVIDIPCGTKGGVMISFGKIEVVNQLHKEFVFETLLNYGVHYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEILSVRVTKPTIPESIRRNFEQMEEERTKVLIAIEKQKVSEKEAETMKKMAISEAEKNANVSKILMEQKLLEKDSARRQEEIENAMYLAREKSLADADFYRVIKEAEANRLKLTPEFLQLKFIQAIANNTKIFFGDKVPNMILDQRLLGNLLHDVSRGRTTTAKADI* >Glyma07g35210.2 sequence type=predicted peptide gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFITQYEPVQVTLQTDMVIDIPCGTKGGVMISFGKIEVVNQLHKEFVFETLLNYGVHYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEILSVRVTKPTIPESIRRNFEQMEEERTKVLIAIEKQKVSEKEAETMKKMAISEAEKNANVSKILMEQKLLEKDSARRQEEIENAMYLAREKSLADADFYRVIKEAEANRLKLTPEFLQLKFIQAIANNTKIFFGDKVPNMILDQRLLGNLLHDVSRGRTTTAKADI* >Glyma07g35210.3 sequence type=predicted peptide gene model=Glyma07g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISFGKIEVVNQLHKEFVFETLLNYGVHYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEILSVRVTKPTIPESIRRNFEQMEEERTKVLIAIEKQKVSEKEAETMKKMAISEAEKNANVSKILMEQKLLEKDSARRQEEIENAMYLAREKSLADADFYRVIKEAEANRLKLTPEFLQLKFIQAIANNTKIFFGDKVPNMILDQRLLGNLLHDVSRGRTTTAKADI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
