Glyma07g35180 - SoyBase

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Report for Sequence Feature Glyma07g35180

Feature Type:	gene_model
Chromosome:	Gm07
Start:	40292903
stop:	40295421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g35180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55570	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 12 \| chr1:20757882-20759771 FORWARD LENGTH=555	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF19	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_G7JHJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-ascorbate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JHJ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KMC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g35180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g35180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g225400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g35180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g35180

Limit To All Plant Sequences

>Glyma07g35180.1   sequence type=CDS   gene model=Glyma07g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGGGTAACATCGTTACTAATGTTGCTATGTCTCTTCGCAGGGGCTATGTCCCCTGTGAAGGGTGAAGACCCTTACTTCTTTTTCACATGGAATGTCACCTATGGCACCCTTTCTCCAGCCGGTGTGCCCCAGCAGGTTATTCTAATCAACAATGAATTCCCTGGACCCAACATAAATTCCACCAGCAACAATAATATCGTCGTCAATGTCTTCAACAACCTTGACGAGCCCTTGCTTTTCCATTGGGCGGGAGTCCAGCAAAGGAAGAATAGTTGGGAAGATGGTGTTGCCGGCACCAATTGCCCTATCCAACCAGGCACAAACTACACGTACCACTTCCAGGTGAAGGACCAAATCGGTAGCTTCTTCTACTACCCTAGCCTAGGGTTGCAGCGTGCTGCCGGAGGCTTCGGCGGCCTCCGCATCAACAGCCGCCTCCTCATCCCAGTCCCCTATGCTGATCCCGAGGATGACTACACCGTCCTCGCCGGCGACTGGTTCACAAAGAGCCACTCAACCCTCCGCAAGCTGCTCGACGGTGGCCGCTCCCTCGGTCGTCCCCAGGCCGTCCTATTGAACGGCCAGAATGCCAAGGGCGACGGCACCGACAAGCCCCTCTTCACCATGATCCCCGGCAAGACCTACAAGTACAGAATCTGCAACGTGGGCCTCAAGAACACCATCAACTTCAGAATCCAAAACCACCCCATGAAGCTCGTTGAAATGGAAGGGTCCCACACTGTGCAAAACACCTACAACTCCCTCGACGTACACCTGGGCCAATGCTTCGGCGTCCTCGTAACCGCCAACCAGGAACCAAAAGACTACTACATGGTCGCCTCCACACGCTTCACCAAATCCATTCTCACCGGAAAGGGAATCATGCGTTACACCACCGGAAAGGCCCCGCCGAGCCCGGAAATCCCCGAGGCCCCCGTGGGCTGGGCCTGGTCGCTGAACCAGTTCCGCTCCTTCCGCTGGAACCTAACGGCCTCTGCAGCCCGGCCCAACCCACAGGGCTCGTACCATTACGGCCAGGTTAACATCACCCGCACTGTGAAGTTCATTAACTCTGTTAGCAGGGATAGTGGGAAGCTCCGTTACGCTATTAACGGCGTTTCTCATGTTGATGGGGAAACCCCAATTAAGCTCGCTGAGTACTTTGGAGTTCCTGAGAAGGTGTTTAAGTACGACATTATTTCCGATAACCCGTCGCAAGACGTTGGAAAAAATGTTGTTTTGCAGCCCAATGTTATCAGATTCAAACACCGCACCTTCATCGAGATCATCTTCGAGAACCCCGAGAAGAGCGTTCAGTCCTACCATTTGAATGGTTATGCATTCTTCGCAGTCGCGATTGAGCCTGGGACTTGGACTCCAGAGAAGAGGAAAAACTACAACCTTCTTGATGCAGTGAGCAGACACACAATGCCAGTGTTCCCGAAATCGTGGGCGGCGATTCTGTTATCATTCGATAACGTTGGGGTGTGGAACTTGAGGTCCGAGCTTGCTGAGAATCGCTACTTGGGACAACAATTGTACATCAGTGTTCTAACTCCTGAGCGTTCTCTGAGGGACGAGTACAACATCCCGGAGTACGCGTTGCTTTGTGGCGTAGTGAAGGGTCTGCCAAAGCCAGAGCCATATCACTGA

Predicted protein sequences of Glyma07g35180

Limit To All Plant Sequences

>Glyma07g35180.1   sequence type=predicted peptide   gene model=Glyma07g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVTSLLMLLCLFAGAMSPVKGEDPYFFFTWNVTYGTLSPAGVPQQVILINNEFPGPNINSTSNNNIVVNVFNNLDEPLLFHWAGVQQRKNSWEDGVAGTNCPIQPGTNYTYHFQVKDQIGSFFYYPSLGLQRAAGGFGGLRINSRLLIPVPYADPEDDYTVLAGDWFTKSHSTLRKLLDGGRSLGRPQAVLLNGQNAKGDGTDKPLFTMIPGKTYKYRICNVGLKNTINFRIQNHPMKLVEMEGSHTVQNTYNSLDVHLGQCFGVLVTANQEPKDYYMVASTRFTKSILTGKGIMRYTTGKAPPSPEIPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGQVNITRTVKFINSVSRDSGKLRYAINGVSHVDGETPIKLAEYFGVPEKVFKYDIISDNPSQDVGKNVVLQPNVIRFKHRTFIEIIFENPEKSVQSYHLNGYAFFAVAIEPGTWTPEKRKNYNLLDAVSRHTMPVFPKSWAAILLSFDNVGVWNLRSELAENRYLGQQLYISVLTPERSLRDEYNIPEYALLCGVVKGLPKPEPYH*

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