Glyma07g34620 - SoyBase

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Report for Sequence Feature Glyma07g34620

Feature Type:	gene_model
Chromosome:	Gm07
Start:	39653416
stop:	39655853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g34620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35110	AT	Annotation by Michelle Graham. TAIR10: transcription activators \| chr2:14795970-14803525 REVERSE LENGTH=1396	SoyBase	E_val: 0	ISS
GO:0003002	GO-bp	Annotation by Michelle Graham. GO Biological Process: regionalization	SoyBase	N/A	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0033043	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045595	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031209	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR12093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12093:SF1	Panther	MEMBRANE-ASSOCIATED PROTEIN HEM	JGI		ISS
PF09735	PFAM	Membrane-associated apoptosis protein	JGI		ISS
UniRef100_A2Q144	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein NAP1 , putative n=1 Tax=Medicago truncatula RepID=A2Q144_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KM80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KM80_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g34620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g34620 not represented in the dataset	Glyma07g34620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g34620

Paralog	Evidence	Comments
Glyma20g02370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g34620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g221000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g34620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g34620

Limit To All Plant Sequences

>Glyma07g34620.1   sequence type=CDS   gene model=Glyma07g34620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATTTGTGCAGTACATGAGAGAATGCATTCTTGGCAACTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAATGATCTTCAACGGCCAACTGTTCTGGAATCACTGATTAAGAGACATATTAGCATTGTGCATCTTGCAGAGCAGCACATCAGCATGGACATTACTCAGGGAATTCGGGAAGTTTTGCTTTCAGAAGCCTTTCCAGGACCAGTTTCTTCTCTGCACTTGTTTGAGAAGCCAACAGATCAACATACAGGATTGGCTACTGAATCTGTATGCAATTGGTACATTGAAAACATAATCAAGGATGTTTCAGGTGCTGGGATTTTGTTTGTTCCAATTCATAAATGCTTCAGGAGTACAAGGCCAGTTGGTGGATATTTTGCAGAATCAGTCACTGATCTCAGGGAATTACAGGCTTTTGTACGTATTTTTGGTGGCTATGGTGTGGACAGGTTAGACCGAATGCTAAAAGAACACACAGATGCTCTTTTAAATTGCATTGACACTTCACTACGCTCAAACCGAGATGTGATAGAAGCAGTTGCTACCAGTCTGCATGCTGGTGATAGAATTGAAAGAGAAGCTTCTGTGAAGCAAATAGTTGATCTGGAAACTGGGATTGGTTTTTGTGTTCAGGCTGGCCTTGCACTGGCTTTTGATCAGCTACTAGCTGAGGCTTCTGGTGCTATACTCGAAGAAGGTGCTCCCTTGATACATTCGTTGCTAGATGGGGTTGTTAAGCATCTACCCGATGGAGTACCAGAAAAGGAAGAAATCAGGAGAATGAGAACAGTGGCAAATACTGTAGGTGTTAATAATCATGATTCAGTTTGGGTAAGATCAATTTTGGAGGAAGTTGGTGGTGCAAGTGATGGATCATGGGGCTTGTTACCATACTTATTTGCCACATTCATGACATCTAATATTTGGTCCACCACGGCATTTAACGTTGACACAGAGGGTTTTAGTAACAATATCCATTGCTTGGCAAGGTGCATTTCTGCAGTGATTGCCGGAAGTGAGTTTGCTAGATTGGAACGGGAACATCAGCATCGACAGTCTTTAACAAATGGACATGCTAGTGACAGAATGGATCCTGAATTATCAAGTCATATGTCAGCCGAAGCAAGTATTAAGTCCACACTGCAGTTATTTGTGAAACTCTCTGCAGATATCATACAGGATTCTTGGAGCGAAACACACAGCACAGCTTATCTTCTTAGACCAACTTTGAGAGATTTCACCTTACCTTCGAAGAAGCTCGCTGGAAACCCACGTTCCATATGCCATTCTCCGTTCAGTATACAGCCAATACTACGCGGATACTCAATCCACTCCATTGGCAATACTAAACACATCACTGATCACCCCGTCATTCACCTGCCGCATCCTCGTGGTGGAGACTCACCACAGTATTATGGGCACGAATCAGGGTACTTCGAAGGATCATCGTCACATAGCCAGGAGCACCTCTATGAAGCTGATATTGGCAGCTTGAGGAGCATGGACAACAAGCAAAGGAACGCTCAACTTCAGGAAGCACTGGCCCCAGTCCACTTCCTAGGTTTGCAGTGTCTAGATCTGCTGATAAGTTATTCACCTTCTGGTAGTGATCAGTTGTCTCTATAA

Predicted protein sequences of Glyma07g34620

Limit To All Plant Sequences

>Glyma07g34620.1   sequence type=predicted peptide   gene model=Glyma07g34620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LFVQYMRECILGNFRRRLLGVLKTDNDLQRPTVLESLIKRHISIVHLAEQHISMDITQGIREVLLSEAFPGPVSSLHLFEKPTDQHTGLATESVCNWYIENIIKDVSGAGILFVPIHKCFRSTRPVGGYFAESVTDLRELQAFVRIFGGYGVDRLDRMLKEHTDALLNCIDTSLRSNRDVIEAVATSLHAGDRIEREASVKQIVDLETGIGFCVQAGLALAFDQLLAEASGAILEEGAPLIHSLLDGVVKHLPDGVPEKEEIRRMRTVANTVGVNNHDSVWVRSILEEVGGASDGSWGLLPYLFATFMTSNIWSTTAFNVDTEGFSNNIHCLARCISAVIAGSEFARLEREHQHRQSLTNGHASDRMDPELSSHMSAEASIKSTLQLFVKLSADIIQDSWSETHSTAYLLRPTLRDFTLPSKKLAGNPRSICHSPFSIQPILRGYSIHSIGNTKHITDHPVIHLPHPRGGDSPQYYGHESGYFEGSSSHSQEHLYEADIGSLRSMDNKQRNAQLQEALAPVHFLGLQCLDLLISYSPSGSDQLSL*

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