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Report for Sequence Feature Glyma07g34520

Feature Type:gene_model
Chromosome:Gm07
Start:39496002
stop:39497759
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g34520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34580AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Herpesvirus UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:14566673-145 SoyBaseE_val: 1.00E-41ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF12507PFAM Human Cytomegalovirus UL139 protein JGI ISS
UniRef100_UPI00023384F4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023384F4 related cluster n=1 Tax=unknown RepID=UPI00023384F4 SoyBaseE_val: 8.00E-154ISS

Expression Patterns of Glyma07g34520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g34520 not represented in the dataset
Glyma07g34520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g34520
ParalogEvidenceComments
Glyma20g02260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g34520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g220100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g34520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g34520
>Glyma07g34520.2   sequence type=CDS   gene model=Glyma07g34520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTTTCCTCCGCATTCCACGAACGGCTCCACCACATGGACCGCGCTCGAATGCAACGCCTCTCTCTTCTCCAGGCAGAGAAAGAATTGCAAGGGAACAAGTCACGCGTTTTGGCTTCAAAGCTCGCTAACATCAGAGCCACGGAACAGAGGTGCTCGTGGCTCGATCAGAAAATTGCGTCGCAGAATTTCAAGCTTCTGGCTCTCAAGTCTCAAATCGAGAACCTCGAAGCCAAGCACGAATCGCTTTCACTAGAACTGAGGTCGATGCAGAACGAGGTGGAGGAGATTGAGGAATTGCGCGTGAAGAGAGACTACTATTACCAGGCAAAGAGGATGGAAATGAAGGAGTTCAAGGAGATTGCGGAGAGGTTTGTAGTAAAATGTAAAGTGGAAGTTCAGAGTTTGAGGAATAGAGTAAACGAGTTGAGGTCATCTTTCGTGGAACTTAAAAGCAACAGTGGCGACTATTGCAATTCGGAGATAGCTGCTGCTGAAATGAGAAAGTTGGAACTCCTGGCTGAAAATGAGAGTGTCTGTAGAAACATTGATTATAACCAACAAGTAAAAGCTCATTTGCAAAAGCAGCTTCAGAGTATTCTGATTACGCAAACACAAGATAAGGGATCGGAGGTGAAGAGTAGTAATGGCTAA
Predicted protein sequences of Glyma07g34520
>Glyma07g34520.2   sequence type=predicted peptide   gene model=Glyma07g34520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSAFHERLHHMDRARMQRLSLLQAEKELQGNKSRVLASKLANIRATEQRCSWLDQKIASQNFKLLALKSQIENLEAKHESLSLELRSMQNEVEEIEELRVKRDYYYQAKRMEMKEFKEIAERFVVKCKVEVQSLRNRVNELRSSFVELKSNSGDYCNSEIAAAEMRKLELLAENESVCRNIDYNQQVKAHLQKQLQSILITQTQDKGSEVKSSNG*






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