SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04800 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141 | SoyBase | E_val: 4.00E-74 | ISS |
| GO:0000028 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit assembly | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG0187 | KOG | 40S ribosomal protein S17 | JGI | ISS | |
| PTHR10732 | Panther | 40S RIBOSOMAL PROTEIN S17 | JGI | ISS | |
| PF00833 | PFAM | Ribosomal S17 | JGI | ISS | |
| UniRef100_B9SWH2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S17, putative n=1 Tax=Ricinus communis RepID=B9SWH2_RICCO | SoyBase | E_val: 9.00E-76 | ISS |
| UniRef100_I1KM67 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KM67_SOYBN | SoyBase | E_val: 3.00E-92 | ISS |
|
Glyma07g34440 not represented in the dataset |
Glyma07g34440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g02170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g219500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g34440.2 sequence type=transcript gene model=Glyma07g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCTCAAGCCCTAACCCATTCGAATAAGAGAGCTAAACCCTAGTTTAGAACATTCTGCGCAGGTAGAGAGAGCGAGAGAACAAGAACATAAGGGAACCACAGCGGCGGTAACAGAAGAACAAGCAGAGAATGGGTCGAGTGAGAACGAAGACGGTGAAGAAATCCTCTCGGCAGGTGATAGAGCGTCACTACTCGCGCATGACCCTGGACTTCCACACGAACAAGAAGCTTCTGGAGGAAGTGGCGATAATCCCGTCGAAGAGGCTAAGGAACAAGATCGCGGGGTTCTCGACGCACCTGATGAAGCGCATCCAGAAGGGCCCTGTGCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAACACCGACCACATCGAGGTCGACAAGGAAACCCTCGACATGCTCCACTCCCTCGGTATCAACGACATCCCCGGCATCACCCAGCAGAACTTCCCCTTCACCAGGAGGTACTGATGATGATGGAGGCTCTTCTGCTTTGAGAAATAAGACTTTGTTTTATGCTTCTCGTTTCGTGTTTTCGTGGTTTTTATTTTATTTTATTTTATTTCTCAAGCCTTTTAATTTTTGTTGTTGTTGCTACTGCTGCTGCTTTAGATTAGACCGAGTGGAATTATTATTAGGGTTTTTGGATTATAAGAAATGATATACCGTTGGAGTCTTTGATATATTCTTTTTGTTGCCAA
>Glyma07g34440.1 sequence type=CDS gene model=Glyma07g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCGAGTGAGAACGAAGACGGTGAAGAAATCCTCTCGGCAGGTGATAGAGCGTCACTACTCGCGCATGACCCTGGACTTCCACACGAACAAGAAGCTTCTGGAGGAAGTGGCGATAATCCCGTCGAAGAGGCTAAGGAACAAGATCGCGGGGTTCTCGACGCACCTGATGAAGCGCATCCAGAAGGGCCCTGTGCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAACACCGACCACATCGAGGTCGACAAGGAAACCCTCGACATGCTCCACTCCCTCGGTATCAACGACATCCCCGGCATCACCCAGGTTGATCCTGTCCCTGTTCAGCAGAACTTCCCCTTCACCAGGAGGTACTGA >Glyma07g34440.2 sequence type=CDS gene model=Glyma07g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCGAGTGAGAACGAAGACGGTGAAGAAATCCTCTCGGCAGGTGATAGAGCGTCACTACTCGCGCATGACCCTGGACTTCCACACGAACAAGAAGCTTCTGGAGGAAGTGGCGATAATCCCGTCGAAGAGGCTAAGGAACAAGATCGCGGGGTTCTCGACGCACCTGATGAAGCGCATCCAGAAGGGCCCTGTGCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAACACCGACCACATCGAGGTCGACAAGGAAACCCTCGACATGCTCCACTCCCTCGGTATCAACGACATCCCCGGCATCACCCAGCAGAACTTCCCCTTCACCAGGAGGTACTGA
>Glyma07g34440.1 sequence type=predicted peptide gene model=Glyma07g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVRTKTVKKSSRQVIERHYSRMTLDFHTNKKLLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINTDHIEVDKETLDMLHSLGINDIPGITQVDPVPVQQNFPFTRRY* >Glyma07g34440.2 sequence type=predicted peptide gene model=Glyma07g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVRTKTVKKSSRQVIERHYSRMTLDFHTNKKLLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINTDHIEVDKETLDMLHSLGINDIPGITQQNFPFTRRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
