SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g34300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g34300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g34300

Feature Type:gene_model
Chromosome:Gm07
Start:39184962
stop:39186663
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15000AT Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 50 | chr1:5168613-5169947 FORWARD LENGTH=444 SoyBaseE_val: 1.00E-179ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
KOG1282 KOG Serine carboxypeptidases (lysosomal cathepsin A) JGI ISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_G7KEM3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7KEM3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KM56UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KM56_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g34300 not represented in the dataset

Glyma07g34300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g01850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g218400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g34300.1   sequence type=CDS   gene model=Glyma07g34300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTCAACGATCATAAACCAAGTCTTTTTCTTCTTCTGCTTCTTTCTATGCTCTCTCTTAGTCTCAGATTCTTCACCATCTGCTTCAAAACCAACTCCTTCATTCCCCAAAGAAGCCCTCCCCACTAAGCATGGTTACCTTCCTATCAGTCCCACTTCCACTTCTTCCATTTTCTATGCCTTCTATGAAGCACAGAACTCAACTTTACCACTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGAAACTTGTACGAACTCGGACCCTGGCGCATCACCGAATCACTCACCCTTCAACGCAACCTTGGTGCTTGGAATAGAGTCTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGAACTGGCTTCAGTGTGGCCTCAACCACACAAGAAATTCCAACGGATCAAATCGGCGTTGCAAAGCATCTTTTTGCTGCTATAACCAGGTTTGTTCAACTTGACCCTCTTTTCAAGCATCGCCCTGTTTATATTACTGGTGAAAGCTATGCTGGCAAGTATGTGCCTGCTATTGGGTACTACATATTGGAGAAAAATGCAAACTTGAAGATTTCTGAAAGAGTGAATTTGGCTGGTGTGGCTATTGGGGATGGGTTAACCGACCCCGAAACTCAAGTGGTTAGTCATGCTGTGAATGCTTATTATGTTGGATTGATCAATCAGAGGCAAAAGGATGGGTTGGAGAAAGCTCAATTGGAAGCAGTTAGATTAGCCCAGATGGGGAATTGGAGTAAAGCAACTGGTGCCAGAAACAAAGTGTTGAATATGTTGCAAAACATGACAGGGTTAGCTACTTTGTATGACTACACAAGGAAGGCTCCTTATGAGGATGATTTGGTTGAACAATTCTTGAACATTGCAGAGGTGAAGAAGGCCTTGGGGGTGAATGAATCGTTTGTATATGAGTTATGCAGTGATGTTGTTGGGGATGTATTACATGCTGATGTTATGAAAAGTGTTAAATATATGGTGGAATACTTGTTGGGTAGGAGCAGGGTTTTGTTATATCAAGGTCAACATGATTTGAGGGATGGTGTGGTTCAAACAGAAGTTTGGGTGAAGACAATGAAATGGGAGGGGATTGTAGATTTTCTTAATGCTGAAAGGAAGATATGGAAGGTTAATGGAGAGCTTGCTGGGTATGTTCAGAATTGGAAGTCTCTAACCAATGTTGTGGTTTTGGGGGCTGGCCATCTTTTGCCTACTGATCAGCCTGTTAATTCTCAAGCAATGATAGAAGATTGGGTTTTGGAAAAGGGTTTGTTTAAAAGCGTGTAG

>Glyma07g34300.1   sequence type=predicted peptide   gene model=Glyma07g34300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESTIINQVFFFFCFFLCSLLVSDSSPSASKPTPSFPKEALPTKHGYLPISPTSTSSIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMIGNLYELGPWRITESLTLQRNLGAWNRVFGLLFLDSPIGTGFSVASTTQEIPTDQIGVAKHLFAAITRFVQLDPLFKHRPVYITGESYAGKYVPAIGYYILEKNANLKISERVNLAGVAIGDGLTDPETQVVSHAVNAYYVGLINQRQKDGLEKAQLEAVRLAQMGNWSKATGARNKVLNMLQNMTGLATLYDYTRKAPYEDDLVEQFLNIAEVKKALGVNESFVYELCSDVVGDVLHADVMKSVKYMVEYLLGRSRVLLYQGQHDLRDGVVQTEVWVKTMKWEGIVDFLNAERKIWKVNGELAGYVQNWKSLTNVVVLGAGHLLPTDQPVNSQAMIEDWVLEKGLFKSV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo