Glyma07g34190 - SoyBase

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Report for Sequence Feature Glyma07g34190

Feature Type:	gene_model
Chromosome:	Gm07
Start:	39092566
stop:	39097498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g34190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70940	AT	Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein \| chr1:26743170-26745871 FORWARD LENGTH=640	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009606	GO-bp	Annotation by Michelle Graham. GO Biological Process: tropism	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0009958	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive gravitropism	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010082	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of root meristem growth	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0010315	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin efflux	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0048766	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair initiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009986	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell surface	SoyBase	N/A	ISS
GO:0012506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vesicle membrane	SoyBase	N/A	ISS
GO:0016328	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: lateral plasma membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0009672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity	SoyBase	N/A	ISS
PF03547	PFAM	Membrane transport protein	JGI		ISS
UniRef100_Q8GV76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier protein n=1 Tax=Medicago truncatula RepID=Q8GV76_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233838B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233838B related cluster n=1 Tax=unknown RepID=UPI000233838B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g34190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g34190

Paralog	Evidence	Comments
Glyma20g01760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g34190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g217900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g34190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g34190

Limit To All Plant Sequences

>Glyma07g34190.2   sequence type=CDS   gene model=Glyma07g34190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACCTGGGGAGATTTCTACACGGTGATGTCGGCGGTGATTCCGCTGTACGTGGCGATGATCCTGGCGTACGGCTCGGTGCGGTGGTGGAAGATATTCTCACCGGACCAATGCTCCGGCATAAACCGCTTCGTCGCGATCTTCGCCGTTCCGCTCCTCTCGTTCCACTTCATCTCCATGAACAACCCGTACGAGATGAACTTCCGGTTCATCGCGGCGGACACGCTCCAGAAAATCATCATGCTCTTCGCCCTCGCCATCTGGACGAACTTCTCCGCCAACGGGAGCCTGGAGTGGATGATTACGATTTTCTCCCTCTCCACATTGCCGAACACGCTCGTGATGGGGATCCCGCTGCTCATCGCCATGTACGGCGAATACTCCGGCAAACTCATGGTGCAGGTGGTGGTGCTGCAGTGCATCATCTGGTACACGCTCCTCCTTTTTCTCTTCGAGTACCGGGGCGCGAAGCTTCTTATAATGGAGCAGTTTCCTGAAACCGCTGCTTCCATAGTCTCCTTCAAGATCGATTCCGACGTCGTTTCGCTCGACGGTAGGGATTTTCTGGAAACAGACGCCGAAGTCGGCGATGATGGGAAGCTTCACGTAACGGTTAGGAAGTCGAACGCTTCCAGAAGGTCCTTTATGATGACTCCGCGGCCCTCTAACCTCACCGGCGCGGAGATTTACAGCCTCAGCTCGTCGCGTAACCCCACGCCACGTGGCTCCAACTTCAACCACGCGGATTTCTACTCCATGATGGGGTACGCGCCGAGGCATTCTAATTTTGGTGCAGCGGATATGTACTCCGTGCAGTCCACGTCACGCGGGGTCACCCCTCGTCCCTCGAACTTCGAGGAGAATTGTGGGTCTGCTGGTGCAATGCAGCAGCAGACCATCAGCTCCCCGAGGTTCGGGTTCTATCCCGCAGTGCAGACGTTGCCCGCGGCGTACCCGGCTCCGAACCCGGAATTCTCCTCCGGGTTAACGAAGAGTGTGAGCAAGAATTCTCAGACGCAGCCTCAGCTTCAGACTCAGACGCAGCCACAGGTTCAAGCTCAAGTTGCTCCTCCTGCTCCTCCTCCTCAAGTAGCTCAACCTGCCAACAGTGGGAATAAAACCAGCCACGATGCTAAGGAGCTCCATATGTTTGTATGGAGCTCCAGTGCGTCGCCAGTTTCTGAAGCCGGCGGCCTCCACGTGTTTAGTGGGGCTGATTTTGGAGCATCGGATCAGTCAGGTCGCTCCGATCAAGGTGCCAAGGAGATTAGGATGTTGGTTGCTGATGACCACCCTCAAAATGGAGAAACCAACAAAGCTGCTGCAGAAGGAGAATTTGGTGGGGAAGAGTTGAAGTTTCCTGCGAAAGAAGGAGAACAAGCAGAGGAAGAGGGAGGGAAAGCTGGACCAGCTGGGCTTAACAAGTTAGGATCTAGTTCAACGGCGGAGCTACACCCGAAAGCCGCTGTCGCCGGTGCTGGAAAACACATGCCTCCGGCGAGTGTGATGACCCGTCTCATACTGATTATGGTGTGGAGGAAGCTTATTCGCAACCCCAACACTTACTCCAGTCTCATTGGTGTCATTTGGTCCCTCGTGGCGTTTAGGTGGCATGTGCACATGCCCAAAATAATTGAGAAATCAATCTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTCAGCTTGGGTCTGTTCATGGCTCTTCAACCTAAGATAATTGCATGTGGGAACTCTGTTGCAACATTTGCCATGGCTGTTCGGTTCCTCACAGGTCCCGCCGTCATGGCAGCAGCTTCCATCGCTGTTGGCCTACGTGGCACCCTCTTGCGTATAGCTATTGTTCAGGCTGCACTACCACAAGGGATTGTTCCATTTGTGTTTGCCAAGGAGTACAACGTCCATCCAGCCATTCTTAGTACAGCGGTTATATTTGGGATGTTGATAGCACTACCAATTACTCTACTCTACTACATATTACTTGGTTTGTAA

Predicted protein sequences of Glyma07g34190

Limit To All Plant Sequences

>Glyma07g34190.2   sequence type=predicted peptide   gene model=Glyma07g34190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITWGDFYTVMSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISMNNPYEMNFRFIAADTLQKIIMLFALAIWTNFSANGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGKLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKIDSDVVSLDGRDFLETDAEVGDDGKLHVTVRKSNASRRSFMMTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHADFYSMMGYAPRHSNFGAADMYSVQSTSRGVTPRPSNFEENCGSAGAMQQQTISSPRFGFYPAVQTLPAAYPAPNPEFSSGLTKSVSKNSQTQPQLQTQTQPQVQAQVAPPAPPPQVAQPANSGNKTSHDAKELHMFVWSSSASPVSEAGGLHVFSGADFGASDQSGRSDQGAKEIRMLVADDHPQNGETNKAAAEGEFGGEELKFPAKEGEQAEEEGGKAGPAGLNKLGSSSTAELHPKAAVAGAGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGVIWSLVAFRWHVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFLTGPAVMAAASIAVGLRGTLLRIAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL*

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