SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G37810 | AT | Annotation by Michelle Graham. TAIR10: NOD26-like intrinsic protein 4;1 | chr5:15045232-15047807 FORWARD LENGTH=283 | SoyBase | E_val: 2.00E-101 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF22 | Panther | gb def: glycerol uptake facilitator protein [mycoplasma pulmonis] | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_B9HW70 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin, MIP family, NIP subfamily n=1 Tax=Populus trichocarpa RepID=B9HW70_POPTR | SoyBase | E_val: 7.00E-111 | ISS |
| UniRef100_UPI000233864B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233864B related cluster n=1 Tax=unknown RepID=UPI000233864B | SoyBase | E_val: 0 | ISS |
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Glyma07g34150 not represented in the dataset |
Glyma07g34150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g217700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g34150.1 sequence type=CDS gene model=Glyma07g34150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAAACGGAGGAAACATCCACGCTGATAGTACCTTTTGCGGTTCTCCTGCGGTAGTTCAAGTTATACAAAAGGTGATTGCAGAGTTGATAGGGACATATTTCTTAATATTTGCAGGGTGTTGTTCTGTGATTATTAATAACGCAGAAGAGACTAAAGGGAGAATTACCTTTCCTGGAATATGCCTAGTGTGGGGTTTCTCAGTGACTATCTTGGTTTATTCTCTTGCTCACGTTTCTGGTGCTCATTTCAATCCAGCGGTCACTCTTAGCTTTGCCATCTATCGCCATTTCCCTTTGAGACTGGTGCCTCTTTATTTTATTGCGCAAGTACTAGGATCTTTCCTTGCTAGTGGGACATTGTACCTTCTCTTTGAAGTAAACGAGAAAACTTACTTTGGAACAATACCATCAGGATCTTATATTCAATCTCTTGTTTTTGAGATACTTACGTCATTTCTCTTAATGTTTGTTGTGTGTGCAGTTTCCACGGACAATAGAGCGATTGGAAAATTGGGAGGGATTGCAGTTGGTATGACAATCATAGTAAACGTCTTCATTGCCGGACCAATCTCAGGAGCTTCCATGAACCCAGCTAGAAGCCTTGGACCAGCTTTGGTGATGTGGGTTTACAATGGAATTTGGATTTATGTAGTTGGACCATTTGTTGGTGCCATACTAGGTGCTACATGCTACAACTTGATTAGATATACTGACAAACCACTCAGAGAAATTGGTGCAAGCTCAAAAATATTTAAAACCAGTGCGTGTACAAGTGCTACATAA
>Glyma07g34150.1 sequence type=predicted peptide gene model=Glyma07g34150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEENGGNIHADSTFCGSPAVVQVIQKVIAELIGTYFLIFAGCCSVIINNAEETKGRITFPGICLVWGFSVTILVYSLAHVSGAHFNPAVTLSFAIYRHFPLRLVPLYFIAQVLGSFLASGTLYLLFEVNEKTYFGTIPSGSYIQSLVFEILTSFLLMFVVCAVSTDNRAIGKLGGIAVGMTIIVNVFIAGPISGASMNPARSLGPALVMWVYNGIWIYVVGPFVGAILGATCYNLIRYTDKPLREIGASSKIFKTSACTSAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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