Glyma07g33790 - SoyBase

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Report for Sequence Feature Glyma07g33790

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38743591
stop:	38746298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08000	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:2555034-2555829 REVERSE LENGTH=143	SoyBase	E_val: 8.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF161	Panther	RNA-BINDING PROTEIN, PUTATIVE	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J6Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7J6Q3_MEDTR	SoyBase	E_val: 5.00E-52	ISS
UniRef100_I1KM18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KM18_SOYBN	SoyBase	E_val: 2.00E-83	ISS

Expression Patterns of Glyma07g33790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g33790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g214800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g33790

Limit To All Plant Sequences

>Glyma07g33790.3   sequence type=transcript   gene model=Glyma07g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAACGCTTGGTGTGAGACAAATAAGAAACACAGACGTGGTTGATTGCTTTGTATATTTGGAAATATGAAGAAGTGTGTGGCGTTTCTTGCCACAACCATTTGGAAAAGGTTCCACGTTTCTCCTCCTCAAACTCAATGTCGATTCTACTGTTCTCCCCCCTCTCATGCTTCCTCCAACAAGCTCTTTGTGGGAGGGTTGTCATGGTCAGTGGACCACAAGTCCCTCAAAGAGGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCTAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATGTGAATAGGCACTAAAATTAAGAGAAATGCTATATCCTCCCCAACATCAATCCCCCAAGCATTTAAAGGTTGACGCGTGTCAATTATTTTACCATAAAATATTTATTTAGTTTAATAATTTAAAATTTTGAGTAATTCCGAACTTAAACTTTCTCACCCTTCAGTTCTCACGAAACCCCCTATCCCCACATGCTCTACCCCGATTTCCAATCGAACGAGCGTCGATTGAGAAGCAATTTACTATGATAGATTTACA

Coding sequences of Glyma07g33790

Limit To All Plant Sequences

>Glyma07g33790.2   sequence type=CDS   gene model=Glyma07g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATTCTACTGTTCTCCCCCCTCTCATGCTTCCTCCAACAAGCTCTTTGTGGGAGGTCTCTCTCTGTCTCTCTTCCATTTTGCTTCTCCTGTTGTGTCATTCTTCCTTCGTTTATTGACTCTGAGATCGTTTCAGGGTTGTCATGGTCAGTGGACCACAAGTCCCTCAAAGAGGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCTAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATGTGAATAGGCACTAA

>Glyma07g33790.3   sequence type=CDS   gene model=Glyma07g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGTGTGTGGCGTTTCTTGCCACAACCATTTGGAAAAGGTTCCACGTTTCTCCTCCTCAAACTCAATGTCGATTCTACTGTTCTCCCCCCTCTCATGCTTCCTCCAACAAGCTCTTTGTGGGAGGGTTGTCATGGTCAGTGGACCACAAGTCCCTCAAAGAGGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCTAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATGTGAATAGGCACTAA

Predicted protein sequences of Glyma07g33790

Limit To All Plant Sequences

>Glyma07g33790.2   sequence type=predicted peptide   gene model=Glyma07g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILLFSPLSCFLQQALCGRSLSVSLPFCFSCCVILPSFIDSEIVSGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNRH*

>Glyma07g33790.3   sequence type=predicted peptide   gene model=Glyma07g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKCVAFLATTIWKRFHVSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNRH*

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