Glyma07g33590 - SoyBase

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Report for Sequence Feature Glyma07g33590

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38547179
stop:	38552775
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1KM02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KM02_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g33590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33590

Paralog	Evidence	Comments
Glyma02g14885	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g213000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g33590

Limit To All Plant Sequences

>Glyma07g33590.2   sequence type=transcript   gene model=Glyma07g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATATGTGATGTGCGGATACGATAAAATAGGGCATGAATTGCACGCGCCAATGACTCACTCTCTCTCTCTTTCTCTTCATTCAACGACCCTTCAAAAATATCTGGCTCACATTACCCCAAGATATTATCTCCCCGATGACGTGGCACCCCATCGACGGCACTGACACGTGTAAAAGCGAAGCCATGTGGAGCCTTTTTCTTCCCCTTTCTCAGAGGGTTTCTTCTTCCCTGCCAAAAAATTCCGATCACGCGCCATGGAACAATACGATCTCCGCCGCCGCCGCCGCTCTCCGCCGTTAACCTTCGATCCCAAACCATTGCCGGAGCTCGCTCGCTCCGCCTCCGCCTCCTCCGCCGTCACCGTCGACAACGCCTCCAAAGGCTTCTCGCATCCGCCTCTGGACCAGTCGACGAGATGGACGGATCAGCAGCACAGTCTATATATTCGTTCTTTAGAGGCCTCATTTGTGAATGAATTGCATCGATCTATGCGTTTACATCATTTGAGCTTAAAAAATAGCACAGATGAAGCATATAAATGTAGATTTTTGCAAAATTCACATAATATGCCTAAGCAGTCTCTGGCTCTACAAGATGGCTGCCAGAAGAAGATCAACCTTGAAAGAGTTGCACCTATGTTAGAGAGCACAGCTGATTCTCATGTTCTTGCAGGAAGTCAATTCAAACTTACATCTGTGGATGGAGGCTGTAGTTTGAGAGAGCATGGCTTGCTTTGTGATGAGGAGATTCATGCAAGAGGAAGTTCAATATTTACTCTAGAAATGGCTTGCAGTTCTACAGAGGTCACCGATCAAAACTTCAAGGATGAGGATGCCAGGTCAAGCTGCATGCCCTTGGTGAAAAGGTTGTGCCATTTGGAAAAGTTCACACTCCAGATGTTTCAACTAGTAGTAATGCAAGCTCAGAAAATAAAGGACATGAATTGCTATCAGAACCCCCAGTGAGCTACCATTTCCCAACATCTGATCTGCCATACTTTTTAAGGGGAAGGTAAGTATATGCAACACAGAATTGAAGTCTCAGATTTTACAGTGGATGCTGCTGATACAAATTGAGAGAATAGACAATTTGCTTGGTGCTCTTTCAAGAATTTCTTGAGAGGCTTGTGTAAAGGAAAATTGAACGTGACAACAACTCTATTCTTGTGAAATTTAGTGCTGGTTAGGTTTATCCAAAGGTGTTTGATGTAACATAATGGAGAAACTTTCGACAGCAATTTGCATAGACATAGTAAAAATTATGACTATATATGATTTTTTTTGTTAGATGAATTTTTGGATGGTTAACAAACTGTTTAGGTATCCTAGATTAGTATGGTATTTCTTTAGTTAGCTTCGTTAAGTTTTCTTACAATAGTTGTACTTCAAATAGTTGAAAAGATAAAGATATCCAATATGCATTTTTCTTAGCAATGAGATTTTATTATGTTAAGTTGTGGCATGTATGTTCATTGATCTATGGTTC

Coding sequences of Glyma07g33590

Limit To All Plant Sequences

>Glyma07g33590.1   sequence type=CDS   gene model=Glyma07g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAATACGATCTCCGCCGCCGCCGCCGCTCTCCGCCGTTAACCTTCGATCCCAAACCATTGCCGGAGCTCGCTCGCTCCGCCTCCGCCTCCTCCGCCGTCACCGTCGACAACGCCTCCAAAGGCTTCTCGCATCCGCCTCTGGACCAGTCGACGAGATGGACGGATCAGCAGCACAGTCTATATATTCGTTCTTTAGAGGCCTCATTTGTGAATGAATTGCATCGATCTATGCGTTTACATCATTTGAGCTTAAAAAATAGCACAGATGAAGCATATAAATGTAGATTTTTGCAAAATTCACATAATATGCCTAAGCAGTCTCTGGCTCTACAAGATGGCTGCCAGAAGAAGATCAACCTTGAAAGAGTTGCACCTATGTTAGAGAGCACAGCTGATTCTCATGTTCTTGCAGGAAGTCAATTCAAACTTACATCTGTGGATGGAGGCTGTAGTTTGAGAGAGCATGGCTTGCTTTGTGATGAGGAGATTCATGCAAGAGGAAGTTCAATATTTACTCTAGAAATGGCTTGCAGTTCTACAGAGGTCACCGATCAAAACTTCAAGGATGAGGATGCCAGGTCAAGCTGCATGCCCTTGGTGAAAAGGTTGAAGACAGCTACAGCTGATAGTTCAAGCACTGATCAAGTTGTGCCATTTGGAAAAGTTCACACTCCAGATGTTTCAACTAGTAGTAATGCAAGCTCAGAAAATAAAGGACATGAATTGCTATCAGAACCCCCAGTGAGCTACCATTTCCCAACATCTGATCTGCCATACTTTTTAAGGGGAAGGTAA

>Glyma07g33590.2   sequence type=CDS   gene model=Glyma07g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAATACGATCTCCGCCGCCGCCGCCGCTCTCCGCCGTTAACCTTCGATCCCAAACCATTGCCGGAGCTCGCTCGCTCCGCCTCCGCCTCCTCCGCCGTCACCGTCGACAACGCCTCCAAAGGCTTCTCGCATCCGCCTCTGGACCAGTCGACGAGATGGACGGATCAGCAGCACAGTCTATATATTCGTTCTTTAGAGGCCTCATTTGTGAATGAATTGCATCGATCTATGCGTTTACATCATTTGAGCTTAAAAAATAGCACAGATGAAGCATATAAATGTAGATTTTTGCAAAATTCACATAATATGCCTAAGCAGTCTCTGGCTCTACAAGATGGCTGCCAGAAGAAGATCAACCTTGAAAGAGTTGCACCTATGTTAGAGAGCACAGCTGATTCTCATGTTCTTGCAGGAAGTCAATTCAAACTTACATCTGTGGATGGAGGCTGTAGTTTGAGAGAGCATGGCTTGCTTTGTGATGAGGAGATTCATGCAAGAGGAAGTTCAATATTTACTCTAGAAATGGCTTGCAGTTCTACAGAGGTCACCGATCAAAACTTCAAGGATGAGGATGCCAGGTCAAGCTGCATGCCCTTGGTGAAAAGGTTGTGCCATTTGGAAAAGTTCACACTCCAGATGTTTCAACTAGTAGTAATGCAAGCTCAGAAAATAAAGGACATGAATTGCTATCAGAACCCCCAGTGA

Predicted protein sequences of Glyma07g33590

Limit To All Plant Sequences

>Glyma07g33590.1   sequence type=predicted peptide   gene model=Glyma07g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQYDLRRRRRSPPLTFDPKPLPELARSASASSAVTVDNASKGFSHPPLDQSTRWTDQQHSLYIRSLEASFVNELHRSMRLHHLSLKNSTDEAYKCRFLQNSHNMPKQSLALQDGCQKKINLERVAPMLESTADSHVLAGSQFKLTSVDGGCSLREHGLLCDEEIHARGSSIFTLEMACSSTEVTDQNFKDEDARSSCMPLVKRLKTATADSSSTDQVVPFGKVHTPDVSTSSNASSENKGHELLSEPPVSYHFPTSDLPYFLRGR*

>Glyma07g33590.2   sequence type=predicted peptide   gene model=Glyma07g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQYDLRRRRRSPPLTFDPKPLPELARSASASSAVTVDNASKGFSHPPLDQSTRWTDQQHSLYIRSLEASFVNELHRSMRLHHLSLKNSTDEAYKCRFLQNSHNMPKQSLALQDGCQKKINLERVAPMLESTADSHVLAGSQFKLTSVDGGCSLREHGLLCDEEIHARGSSIFTLEMACSSTEVTDQNFKDEDARSSCMPLVKRLCHLEKFTLQMFQLVVMQAQKIKDMNCYQNPQ*

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