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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19280 | AT | Annotation by Michelle Graham. TAIR10: fucosyltransferase 11 | chr3:6681409-6683801 REVERSE LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0036065 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fucosylation | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008417 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0017083 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0046920 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-(1->3)-fucosyltransferase activity | SoyBase | N/A | ISS |
| KOG2619 | KOG | Fucosyltransferase | JGI | ISS | |
| PTHR11929 | Panther | ALPHA-(1,3)-FUCOSYLTRANSFERASE | JGI | ISS | |
| PTHR11929:SF6 | Panther | ALPHA-(1,3)-FUCOSYLTRANSFERASE | JGI | ISS | |
| PF00852 | PFAM | Glycosyltransferase family 10 (fucosyltransferase) | JGI | ISS | |
| UniRef100_I1KM01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KM01_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9ST51 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fuct c3 protein n=1 Tax=Vigna radiata var. radiata RepID=Q9ST51_VIGRR | SoyBase | E_val: 0 | ISS |
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Glyma07g33580 not represented in the dataset |
Glyma07g33580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g14890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g212900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g33580.2 sequence type=transcript gene model=Glyma07g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAAAAACAGTATTTTAGAAGGCCTTGTTTGTTGTCGTGTTTTTATTAATTTTTCTGGTCGTTTTGGCGTTGCTCATTGGTTTCAGTGACGCACATAACAGCAGCACCACCCCGTAGACTTTGAATGTGGAAAATCTTTGCCACTTCGGCAACTAATACACAAACAGAAAGTTTGCATTTTTTATTTTTTTTATTTTCTTCTTTATTTCTTCCTCGCAGATAGAGGGAGCCACGAGAAGCTTCAACCCTTTTACCCTTCATGGAATCGCGTCCATAACGCTACATATTTCCGTTTCTCTTATTCTCATTGACTTTGTTTTGTTTTTGTTTCGCGCAATTTTGATCTATGGGTCTCGCGAAGAATCTGCGAGGCTCGAGAACGGAAGCGCCACAAGAAGGTTTACCCGTTTCGGCGGTTTCCGGTGGCGCGGCGGCGAAGACGAAATGGACCAATCTAATGCCTCTGGTCGTGGCCCTCGTCGTCGTTGCGGAGATCGCGTTTCTGGGAAGGTTGGACATGGCCAAGAACGCGGAGATGGTTGACACCCTCGCTGACTTCTTCTACCGTTCTCCCGCGGTGGTTGAAGGTGACGATTTGGGGCTGGGCACGGTGGCAGGTGGTGGCGGCGGTGGCGGTAATCGGAATTCTGAATCGGAGAGTTGTGAGAAGTGGTTGGAGAGGGAGGATGCTGTGACTTATTCGAGGGACTTTGCTAAAGAACCTGTTTTTGTTTCTGGAGCTGACCAGGAATGGAAGTCATGCTCAGTGGGATGTAAATTTGGGTTTAGTGGGGATAAGAAACCTGATGCTGCATTTGGGTTACCTCAACCAGGTGAAACAGCTAGCGTTCTGCGATCGATGGAATCAGCACAATACTATGCTGAGAACAATCTTGCCATGGCAAGACGGTGGGAGGGGATATGACATTGTAATGACAACCAGTCTATCATCTGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGACATCATGGCACCAATGAAGCCAAAAACTGAAGCTGCTCTTGCAGCTGCATTCATTTCCAATTGTGGTGCTCGAAATTTCCGGTTGCAAGCTCTTGAAGCCCTTGAAAAATCAAACATCAAGATTGACTCTTATGGTGGTTGTCATAGGAACCGTGATGGAAGAGTGGATAAAGTGGAAGCCTTGAAGCACTACAAATTTAGCTTAGCATTTGAAAATTCTAATGAGGAAGATTATGTAACTGAAAAATTCTTCCAATCCCTTGTTGCTGGAACTATCCCTGTGGTTGTTGGTGCTCCAAATATTCAGGATTTTGCTCCTTCTCCTGGTTCAATTATACATATTAAAGAGATAGAGGATGTTGAGTCTGTTGCGAAGTCCATGAGATACCTAGCAGAAAATCCTGAAGCATATAATCAATCTTTGAGGTGGAAGTATGAGGGCCCATCTGATTCCTTCAAGGCCCTTGTGGATATGGCAGCTGTACATTCTTCCTGCCGCCTTTGCATTCACTTGGCCACAGTGAGTAGAGAGAAGGAAGAAAATAGTCCAGGCTTTAAGAAACGCCCTTGCAAGTGTACTAGAGGGCCAAAAACTGTGTATCATATTTATGTGAGAGAAAGAGGAAGGTTTGAGATGGAATCCATTTACTTGAGGTCTAGCAATTTAACCCTTGAGGCCTTGAAGTTTGCTGTTGTTTCAAAGTTCACATCCCTGAATCATGTACCTATATGGAAGACAGAAAGACCTGAAATTCTTAGAGGGGGCAATGATTTAAAACTCCACAAAATATACCCAGTTGGGTTGACACAAAGACAAGCTCTTTATACCTTCAGCTTCAAAGGGGATGCAGATTTCAGGAGTCACTTGGAAAGCCATCCTTGTGCAAAGTTTGAAGTCATTTTTGTGTAGCATGTGCTAGTGGCCTCTCTGCTCTACATGAATAGCTTCTTCACTTAACTGAGCGGTAGAGTTTTAGGGATGAGTATGGCAATGAAACTGGCATGGCTTTATTTATGCATAGCTTCTTGACCAACTCATTGATGATTTATATTCAAAAGATAATCTTACTTTTGAACTCTTTTGTGTACAAGAGGTGAGGTTCCATATTTAATGCTTAGTTTTAGTTATAGAGTTTCTATCTGATCATCTAGAAAAGCCACATGATGATGGACAATTGGTCAGCATGCCAGTTCTTGTATACTGTGGGTGAAAAACTAAAATTTAAATGGAAGCAGCAGATGTTTCACTCAAGAATACGTTATGCCTTCTTTTAAGATATTTTTGGGCCCTACCTAGAAATTTAAATTTTGGACCCTTGGCCAAAACTATTCGAGAAATTTAATATAATATAAATTATCAATCCTTGTAGTTTTTGGTTGGTTGAGT
>Glyma07g33580.1 sequence type=CDS gene model=Glyma07g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTCGCGAAGAATCTGCGAGGCTCGAGAACGGAAGCGCCACAAGAAGGTTTACCCGTTTCGGCGGTTTCCGGTGGCGCGGCGGCGAAGACGAAATGGACCAATCTAATGCCTCTGGTCGTGGCCCTCGTCGTCGTTGCGGAGATCGCGTTTCTGGGAAGGTTGGACATGGCCAAGAACGCGGAGATGGTTGACACCCTCGCTGACTTCTTCTACCGTTCTCCCGCGGTGGTTGAAGGTGACGATTTGGGGCTGGGCACGGTGGCAGGTGGTGGCGGCGGTGGCGGTAATCGGAATTCTGAATCGGAGAGTTGTGAGAAGTGGTTGGAGAGGGAGGATGCTGTGACTTATTCGAGGGACTTTGCTAAAGAACCTGTTTTTGTTTCTGGAGCTGACCAGGAATGGAAGTCATGCTCAGTGGGATGTAAATTTGGGTTTAGTGGGGATAAGAAACCTGATGCTGCATTTGGGTTACCTCAACCAGGTGAAACAGCTAGCGTTCTGCGATCGATGGAATCAGCACAATACTATGCTGAGAACAATCTTGCCATGGCAAGACGGAGGGGATATGACATTGTAATGACAACCAGTCTATCATCTGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGACATCATGGCACCAATGAAGCCAAAAACTGAAGCTGCTCTTGCAGCTGCATTCATTTCCAATTGTGGTGCTCGAAATTTCCGGTTGCAAGCTCTTGAAGCCCTTGAAAAATCAAACATCAAGATTGACTCTTATGGTGGTTGTCATAGGAACCGTGATGGAAGAGTGGATAAAGTGGAAGCCTTGAAGCACTACAAATTTAGCTTAGCATTTGAAAATTCTAATGAGGAAGATTATGTAACTGAAAAATTCTTCCAATCCCTTGTTGCTGGAACTATCCCTGTGGTTGTTGGTGCTCCAAATATTCAGGATTTTGCTCCTTCTCCTGGTTCAATTATACATATTAAAGAGATAGAGGATGTTGAGTCTGTTGCGAAGTCCATGAGATACCTAGCAGAAAATCCTGAAGCATATAATCAATCTTTGAGGTGGAAGTATGAGGGCCCATCTGATTCCTTCAAGGCCCTTGTGGATATGGCAGCTGTACATTCTTCCTGCCGCCTTTGCATTCACTTGGCCACAGTGAGTAGAGAGAAGGAAGAAAATAGTCCAGGCTTTAAGAAACGCCCTTGCAAGTGTACTAGAGGGCCAAAAACTGTGTATCATATTTATGTGAGAGAAAGAGGAAGGTTTGAGATGGAATCCATTTACTTGAGGTCTAGCAATTTAACCCTTGAGGCCTTGAAGTTTGCTGTTGTTTCAAAGTTCACATCCCTGAATCATGTACCTATATGGAAGACAGAAAGACCTGAAATTCTTAGAGGGGGCAATGATTTAAAACTCCACAAAATATACCCAGTTGGGTTGACACAAAGACAAGCTCTTTATACCTTCAGCTTCAAAGGGGATGCAGATTTCAGGAGTCACTTGGAAAGCCATCCTTGTGCAAAGTTTGAAGTCATTTTTGTGTAG >Glyma07g33580.2 sequence type=CDS gene model=Glyma07g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCATTTGGGTTACCTCAACCAGGTGAAACAGCTAGCGTTCTGCGATCGATGGAATCAGCACAATACTATGCTGAGAACAATCTTGCCATGGCAAGACGGTGGGAGGGGATATGACATTGTAATGACAACCAGTCTATCATCTGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGACATCATGGCACCAATGAAGCCAAAAACTGAAGCTGCTCTTGCAGCTGCATTCATTTCCAATTGTGGTGCTCGAAATTTCCGGTTGCAAGCTCTTGAAGCCCTTGAAAAATCAAACATCAAGATTGACTCTTATGGTGGTTGTCATAGGAACCGTGATGGAAGAGTGGATAAAGTGGAAGCCTTGAAGCACTACAAATTTAGCTTAGCATTTGAAAATTCTAATGAGGAAGATTATGTAACTGAAAAATTCTTCCAATCCCTTGTTGCTGGAACTATCCCTGTGGTTGTTGGTGCTCCAAATATTCAGGATTTTGCTCCTTCTCCTGGTTCAATTATACATATTAAAGAGATAGAGGATGTTGAGTCTGTTGCGAAGTCCATGAGATACCTAGCAGAAAATCCTGAAGCATATAATCAATCTTTGAGGTGGAAGTATGAGGGCCCATCTGATTCCTTCAAGGCCCTTGTGGATATGGCAGCTGTACATTCTTCCTGCCGCCTTTGCATTCACTTGGCCACAGTGAGTAGAGAGAAGGAAGAAAATAGTCCAGGCTTTAAGAAACGCCCTTGCAAGTGTACTAGAGGGCCAAAAACTGTGTATCATATTTATGTGAGAGAAAGAGGAAGGTTTGAGATGGAATCCATTTACTTGAGGTCTAGCAATTTAACCCTTGAGGCCTTGAAGTTTGCTGTTGTTTCAAAGTTCACATCCCTGAATCATGTACCTATATGGAAGACAGAAAGACCTGAAATTCTTAGAGGGGGCAATGATTTAAAACTCCACAAAATATACCCAGTTGGGTTGACACAAAGACAAGCTCTTTATACCTTCAGCTTCAAAGGGGATGCAGATTTCAGGAGTCACTTGGAAAGCCATCCTTGTGCAAAGTTTGAAGTCATTTTTGTGTAG
>Glyma07g33580.1 sequence type=predicted peptide gene model=Glyma07g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLAKNLRGSRTEAPQEGLPVSAVSGGAAAKTKWTNLMPLVVALVVVAEIAFLGRLDMAKNAEMVDTLADFFYRSPAVVEGDDLGLGTVAGGGGGGGNRNSESESCEKWLEREDAVTYSRDFAKEPVFVSGADQEWKSCSVGCKFGFSGDKKPDAAFGLPQPGETASVLRSMESAQYYAENNLAMARRRGYDIVMTTSLSSDVPVGYFSWAEYDIMAPMKPKTEAALAAAFISNCGARNFRLQALEALEKSNIKIDSYGGCHRNRDGRVDKVEALKHYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIQDFAPSPGSIIHIKEIEDVESVAKSMRYLAENPEAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATVSREKEENSPGFKKRPCKCTRGPKTVYHIYVRERGRFEMESIYLRSSNLTLEALKFAVVSKFTSLNHVPIWKTERPEILRGGNDLKLHKIYPVGLTQRQALYTFSFKGDADFRSHLESHPCAKFEVIFV* >Glyma07g33580.2 sequence type=predicted peptide gene model=Glyma07g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHLGYLNQVKQLAFCDRWNQHNTMLRTILPWQDGGRGYDIVMTTSLSSDVPVGYFSWAEYDIMAPMKPKTEAALAAAFISNCGARNFRLQALEALEKSNIKIDSYGGCHRNRDGRVDKVEALKHYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIQDFAPSPGSIIHIKEIEDVESVAKSMRYLAENPEAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATVSREKEENSPGFKKRPCKCTRGPKTVYHIYVRERGRFEMESIYLRSSNLTLEALKFAVVSKFTSLNHVPIWKTERPEILRGGNDLKLHKIYPVGLTQRQALYTFSFKGDADFRSHLESHPCAKFEVIFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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