Glyma07g33530 - SoyBase

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Report for Sequence Feature Glyma07g33530

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38443244
stop:	38448659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19260	AT	Annotation by Michelle Graham. TAIR10: LAG1 homologue 2 \| chr3:6669448-6671257 REVERSE LENGTH=296	SoyBase	E_val: 6.00E-133	ISS
GO:0002238	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0042759	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0050291	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity	SoyBase	N/A	ISS
KOG1607	KOG	Protein transporter of the TRAM (translocating chain-associating membrane) superfamily	JGI		ISS
PTHR12560	Panther	LONGEVITY ASSURANCE FACTOR 1 (LAG1)	JGI		ISS
PF03798	PFAM	TLC domain	JGI		ISS
UniRef100_G7JL86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LAG1 longevity assurance-like protein n=1 Tax=Medicago truncatula RepID=G7JL86_MEDTR	SoyBase	E_val: 3.00E-169	ISS
UniRef100_UPI0002336B1D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336B1D related cluster n=1 Tax=unknown RepID=UPI0002336B1D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g33530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33530

Paralog	Evidence	Comments
Glyma02g14930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g212500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g33530

Limit To All Plant Sequences

>Glyma07g33530.2   sequence type=CDS   gene model=Glyma07g33530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACAAACCCTCTCAGCATCTGTGTATTTTTCCGTTGCAATTGCAACCTCCCTCTTCACACTTTCCCTCCTCCGTCTTCTTCCTCTGCACGCATTTTCCGCTGCAGCAACTCCAAAGCCGCCAGCTCAGCATCCTCGAAATCAGGTGTTGCAATCTGGCATGGATTTCCTCTGGAGCGAGAATGCGACGACGCCGCGCGCCTCGCATTTCTCCGTCGCGATCTGCTTCGCCTTCGCCAGTTTCGCGGCCAGGTTCTTCCTTGACAGATTCGTCTTTCGCAGTTTGGCCATTAGGATGTTGACAAAGGGCAGAGCTCCTTCACGTATTACTAAGGAAATGCAAGTAAAGATTGGAAAATGCTCAGAGTCAATGTGGAAGCTAACATATTATGCTGCAGTTGAAGCATTTGTTCTTAAAATTACCTACCATGAACCCTGGTTCACTAATACGAAGTTATACTTCAATGACTGGCCAAATCATGAGTTGAAGAGTCCCCTAGTGTTGTACTACATGTGCCAGTGTGGGTTCTACATATATAGCATTGCTGCTATTCTCACATGGGAGACTCGAAGGAAGGATTTTTCAGTGATGTTTACTCACCATGTAATTACTGTTTTACTGATTGGGATTTCATATCTAACAAGTTTTTTTAGGGTTGGCTCCATAATCCTCGCCCTTCATGATGCAAGTGACGTATTCATGGAAGCTGCCAAGGTTTTCAAGTATTCTGGAAGGGAGTTTGGTGCAAGTGTGTGTTTTGGATTCTTTGCTGTTTCGTGGCTCATACTGCGGCTAATTTTCTTTCCATTTTGGGTTATTAAAGCAACGAGCATTGATCTTCAGCAAGTCTTAAGCCTGTCAGAGGGTTTTCATATGTTTCTTTACTATGTTTTTAATACAATGCTCATAATGCTGCTCATCTTCCATATATATTGGTGGAAGCTCATTTGTGCGATGATCTTGAGGCAGCTGAAAAATAGGGGAAAAGTTGGCGAGGATATAAGATCAGATTCAGATGATGACTGA

Predicted protein sequences of Glyma07g33530

Limit To All Plant Sequences

>Glyma07g33530.2   sequence type=predicted peptide   gene model=Glyma07g33530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QKQTLSASVYFSVAIATSLFTLSLLRLLPLHAFSAAATPKPPAQHPRNQVLQSGMDFLWSENATTPRASHFSVAICFAFASFAARFFLDRFVFRSLAIRMLTKGRAPSRITKEMQVKIGKCSESMWKLTYYAAVEAFVLKITYHEPWFTNTKLYFNDWPNHELKSPLVLYYMCQCGFYIYSIAAILTWETRRKDFSVMFTHHVITVLLIGISYLTSFFRVGSIILALHDASDVFMEAAKVFKYSGREFGASVCFGFFAVSWLILRLIFFPFWVIKATSIDLQQVLSLSEGFHMFLYYVFNTMLIMLLIFHIYWWKLICAMILRQLKNRGKVGEDIRSDSDDD*

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