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Report for Sequence Feature Glyma07g33511

Feature Type:gene_model
Chromosome:Gm07
Start:38428874
stop:38432132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g33511
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34410AT Annotation by Michelle Graham. TAIR10: redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268 SoyBaseE_val: 3.00E-32ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7JL90UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene responsive transcription factor 2a n=1 Tax=Medicago truncatula RepID=G7JL90_MEDTR SoyBaseE_val: 2.00E-80ISS
UniRef100_UPI000189D0C7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D0C7 related cluster n=1 Tax=unknown RepID=UPI000189D0C7 SoyBaseE_val: 1.00E-165ISS

Expression Patterns of Glyma07g33511
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g33511 not represented in the dataset
Glyma07g33511 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33511
ParalogEvidenceComments
Glyma02g14940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33511 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma07g33511
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g33511
>Glyma07g33511.1   sequence type=CDS   gene model=Glyma07g33511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGTTGTCAACAAATTTTTCACATCATTTTTTATTATTTAAATTATTTAAAAAATCCAATTCGCCCTCCTCCTCTTCTCCTTCCTCGTCTCCCTCCTCTTCTTCCTCTTTTAAAGATCCCTTCCTCCACCACAAACCCCCTTGTCTTCCTCCAAAACTACTTCCAAACCCTAAGAGCCAGCGGTGGCGGCAACCTCCAACTCGTGATCAAGTCCAGCAACCCTGGCAGAGCCTTCCACTTCCTCGGCGTCACCCACAACGACTACTTCTTCAGGTCAGGTCTTGAGGAGTTGATCCAACACCTCACCGAAAATTATCGTAATCGCTACGGCACCCCACTAGCCTCCAAGTTTGATGTCGAGGGCTTGGGACTTAGAAAAGTTGTATCGTTTTCGTTTCCACAGGTTGCGACTATGTGCAAGGAGCGACTACATGAGATCGTGAATGAAGAAATGGACCACGCGCATGAGAATTTGGAGTGGAAACTGACGATGAAGAACGAATTCGCTCGCATGGACGATAAGGTTCACTGCCTAAGCCAGAGCAACCAGACCTTCACCTGTAGGTGTGACTTCAAACTCCTCACTGTAATGCCGTCATCGCCATCGTCACACCAGACAAACTCTTTGTCTCCAACTGCAACAGCTCCCACATCTTACTCTACCATAATGGCACCACCATCCCTCTCTCCTCCGATCACAAGCGTTGAAAGTGAATATTCAAGATTTGGAATAATAATAGTAATACGGACAAAGTTTGACCTCCGTAGAGTTCGAAAATTAAACTTCAACGCGCCAAACACAAAGCAAACACCTCCATCTACAAACAAACACACTTCACAACTTTGCTTTTTCTCTCTTTCAATGTCCTCTTCTTCCTTCTCCCCCGCCACTCTCACCACCGAGCAGGAGCTTTCCGTCATCGTTGCCGCCCTTACCAACGTCGTCGCCGGCTCCACCTCCGCCTCCAGCTCCTTCTCCCTCCCCGAATTCCGCCTTCCACAGACCTCTGATCCTCTCGCCGCCGCCTGCCTAATGCCGCCGCCGCCGCCGCCGAGCATGGACACTTGTCGCGAGTGCAACATCGCAGGATGCCTGGGATGCAACTTTTTCCCGGAGGAGAAAAAGAAGCAGAAGAGGGCCAAGAAGAAGTACAGAGGCGTGAGGCAGAGGCCCTGGGGAAAGTGGGCCGCGGAGATTCGCGACCCTCGTCGTGCTGCCCGGGTCTGGCTCGGCACGTTCGGAACCGCCGAGGATGCCGCCCGGGCCTACGACAAGGCCGCGATTGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTCCCCTTGGTGGACGAGTCGCTCACTTTGCAGCAGAGCGAGCCAGAGAGGGTTCAAACAGAAGAAGAGCAAATAAAGACAGAGAATCTCAATCAAGGTATGGAAATGGATTCATTCGGGAACAAGGATACCGAATTCTGGGACAGGATTAACGAAGCTGATTTTCATCAGCTCATGATGATGATGGATTTTGCTGGAGATTCTTCCGACTCTGCCACTGGGAACGCTCTTAGTTCTTGA
Predicted protein sequences of Glyma07g33511
>Glyma07g33511.1   sequence type=predicted peptide   gene model=Glyma07g33511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECCQQIFHIIFYYLNYLKNPIRPPPLLLPRLPPLLPLLKIPSSTTNPLVFLQNYFQTLRASGGGNLQLVIKSSNPGRAFHFLGVTHNDYFFRSGLEELIQHLTENYRNRYGTPLASKFDVEGLGLRKVVSFSFPQVATMCKERLHEIVNEEMDHAHENLEWKLTMKNEFARMDDKVHCLSQSNQTFTCRCDFKLLTVMPSSPSSHQTNSLSPTATAPTSYSTIMAPPSLSPPITSVESEYSRFGIIIVIRTKFDLRRVRKLNFNAPNTKQTPPSTNKHTSQLCFFSLSMSSSSFSPATLTTEQELSVIVAALTNVVAGSTSASSSFSLPEFRLPQTSDPLAAACLMPPPPPPSMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFGTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLTLQQSEPERVQTEEEQIKTENLNQGMEMDSFGNKDTEFWDRINEADFHQLMMMMDFAGDSSDSATGNALSS*






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