Glyma07g33490 - SoyBase

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Report for Sequence Feature Glyma07g33490

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38412655
stop:	38416761
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19240	AT	Annotation by Michelle Graham. TAIR10: Vacuolar import/degradation, Vid27-related protein \| chr3:6664383-6666423 FORWARD LENGTH=648	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2395	KOG	Protein involved in vacuole import and degradation	JGI		ISS
PF08553	PFAM	VID27 cytoplasmic protein	JGI		ISS
UniRef100_G7JL95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEM2 n=1 Tax=Medicago truncatula RepID=G7JL95_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KLZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLZ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g33490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33490

Paralog	Evidence	Comments
Glyma02g14960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g212300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g33490

Limit To All Plant Sequences

>Glyma07g33490.1   sequence type=CDS   gene model=Glyma07g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTTCTCAGAGCCGCGAAGGCCTCGAAGTCACCGACTCAGACTCCGACTACGAAAACGAAGAAGAAACAGAGCACTACGAAGACGCGAAAACCACCCACTCCACCGAGCTCGATGACGTGGACGCGAAACTCAAAGCCTTAAAACTCAAATACCAAACGCCGTCTTCCTCCGCCAAACCGCTTCCCCAAAACGCCGTTAAGCTCTATCTCCACATCGGCGGCAACACTCCCAACGCCAAATGGATCCTCTCCGACAAACACACCTCCTACGCTTTCCACAAAGACACCGACGAAAACGAAAACGACGATGTTTGGCTCCTCACTGTAGGTTCCAAGGTCCGCGCTAGGGTTTCCTCCGAAATGCAATTGAAGATGTTCGGCGACCAGCGCCGCGTCGATTTCGTCGCCGACGGCGTCTGGGCCCTCAAGTTCCCCTCCGATGACACCTACCGCCGATTCGTCACGGAATTTCAGAGCTGCATGTTCGAGAACGTGTACGGAATCGAGTGCACGGAAGAAAACAAGGTCAAAATCTACGGTAAAGAGTTCATCGGCTGGGTGAAGCCGGAAGCCGCCGACGATTCCGTCTGGGAGGACGCCGTCTCCGGAGAACCGTCTCCTTCGCCGTCGCCGTCGCGGCGGAGAAACGATTTAATGGAGGAATTCGAAGAGGCCGCGAATGGCGGGGTCCAAACCCTAACCCTAGGCGCTTTGGATAATAGTTTTATGGTGAACGACACCGGCGTCCACGTGTACCGCAACTTCGACCGCGGGATCCACGGCAAGGGCGTCGCCGTGAAATTCGCCGGAGATGGTTCGACACCGAACAAGGCTTTGTTGATGCGCGCAGAAACGAACATGATGCTGATGAGTCCCTTAAACGACGGAAAGCCCCACGCTTCGAAGCTTCACCAGCTCGACATTGAAACGGGGAAGATTGTTACGGAGTGGAAGTTTGGAAAAGACGGTGCTGACTTAACGATGAGGGATATCACCAATGACACCAAAGGGTCGCAGTTGGACCCTTCGGAGTCAACGTTTTTGGGGCTGGATGATAACCGGTTGTGCCAGTGGGACATGAGGGATAGGAAGGGAATTGTTCAGAACATTGCCACGGCGAGTTCTTCTCCCGTTTTGCATTGGAGCCAGGGGCATCAGTTTTCCAGAGGGACTAACTTTCAGTGCTTTGCGACCACCGGTGATGGGTCCATTGTTGTGGGGTCTCTTGATGGGAAGATAAGGTTGTACTCGAAGACGTCGATGAGGATGGCTAAGACAGCATTTCCTGGGCTTGGTTCGCCGATTACTAGTGTTGATGTTACTTATGATGGCAAGTGGGTGCTTGGCACTACGGATACCTACTTGGTGCTCATTTGTACCTTGTTTACGGATAAAGATGGGAGGACGAAGACCGGATTTAGTGGTAGAATGGGGAACAGGATACCTGCTCCGAGGCTCTTGAAGTTGACTCCTCTTGATTCGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAGTTTAGTGTGATATGGGATTTTCAGCAGGTGAAGAACAGTGCTCATGAATGTTACAGGAATCAAGAAGGGCTGAAGAGCTGTTACTGTTACAAGATAATATTGAAGGATGAGTCCATTGTAGAATCGCGATTTATGCACGACAAATTTGCTGTTAGTGACTCTCCAGAAGCTCCGTTGGTGGTGGCAACTCCTATGAAAGTCAGCTCAATCAGCATGTCTGGAAAGCGACATGGTTAA

Predicted protein sequences of Glyma07g33490

Limit To All Plant Sequences

>Glyma07g33490.1   sequence type=predicted peptide   gene model=Glyma07g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTSQSREGLEVTDSDSDYENEEETEHYEDAKTTHSTELDDVDAKLKALKLKYQTPSSSAKPLPQNAVKLYLHIGGNTPNAKWILSDKHTSYAFHKDTDENENDDVWLLTVGSKVRARVSSEMQLKMFGDQRRVDFVADGVWALKFPSDDTYRRFVTEFQSCMFENVYGIECTEENKVKIYGKEFIGWVKPEAADDSVWEDAVSGEPSPSPSPSRRRNDLMEEFEEAANGGVQTLTLGALDNSFMVNDTGVHVYRNFDRGIHGKGVAVKFAGDGSTPNKALLMRAETNMMLMSPLNDGKPHASKLHQLDIETGKIVTEWKFGKDGADLTMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSSPVLHWSQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTSMRMAKTAFPGLGSPITSVDVTYDGKWVLGTTDTYLVLICTLFTDKDGRTKTGFSGRMGNRIPAPRLLKLTPLDSHLAGANNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQEGLKSCYCYKIILKDESIVESRFMHDKFAVSDSPEAPLVVATPMKVSSISMSGKRHG*

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