SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g33441

Feature Type:gene_model
Chromosome:Gm07
Start:38382346
stop:38385023
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g33441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14870AT Annotation by Michelle Graham. TAIR10: PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152 SoyBaseE_val: 2.00E-51ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR15907Panther FAMILY NOT NAMED JGI ISS
PTHR15907:SF17Panther UNKNOWN PROTEIN JGI ISS
PF04749PFAM PLAC8 family JGI ISS
UniRef100_G7JLA3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Placenta-specific gene 8 protein n=1 Tax=Medicago truncatula RepID=G7JLA3_MEDTR SoyBaseE_val: 2.00E-90ISS
UniRef100_UPI000233837CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233837C related cluster n=1 Tax=unknown RepID=UPI000233837C SoyBaseE_val: 2.00E-140ISS

Expression Patterns of Glyma07g33441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g33441 not represented in the dataset
Glyma07g33441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33441
ParalogEvidenceComments
Glyma02g15020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g211800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g33441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g33441
>Glyma07g33441.2   sequence type=transcript   gene model=Glyma07g33441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTCATTGGACATATTCCAATTATTTATGTTGACTTCAAATGCTTATTACTAATTAGTACTTTTCTTTGCAACTTCTGGTTATGAAAAACTATTGCCTAACTAGCTAGCTAGTAATTAAAATAAGGAGTGCCCTCTTTAAATTAAGTTCCATCTATTTATATATACTAAGATAAGCCGAAAAGTTTGGCATGCTGTTAGAGTGTCATTACAGTAACAGTAATTTAATTCTAGCTAATTTGCTAAAGTACCAGCAAAATGTATCCTACAGTAGATGAACATGATGAGGTATATGCAGCTCATCATAGACATCCAGGGTATGTTCTACCAGTTGTGGTGCCACCAAATTATGGTCCTCCTCAAATTCCATCCTATGCTCCTCCATACATCAGCAACAGTGTTAGTGTAAGGGGTCCTGTGATTAGGACACAGCGATGGTCAACTGGTCTGTGCCGTTGTACTGATGATCCTGGAAACTGTTTGGTCACTTGCTTCTGCCCCTGTGTTACATTTGGATTGATAGCAGAGATAGTAGATAAAGGCAATACAACTTGCACTTGTGCTGGGGCTATTTATGGGACCCTACTAGCTCTGAGTGGGCTTGCATGCTTGTATTCTTGCTATTATAGGTCCAAACTGAGGGTACAATATGACTTACCAGAGGCTCCATGTATGGACTGTTTAGTTCATTTCTGCTGTGAAACATGTGCTCTATGTCAGGAGTATAGGGAGCTTAAAAACCGTGGATTTGACTTGAGCATAGGGTGGGAAGCCAACATGGAAAGACAAAGGCAAGGAGCTATAGTATCACCAGTAATGTCACAATCTATGACAAGATGAAAAGTGAAACCTCTTTAGGAGCATTTTGGTCTACCCTGAGATCGAGCTGTTGGTTGGTGCTGTTAATTTCAACTCCTTGTGGTGTGTGTCTATATATATATATATATATATATATATATATATATATATATATTCTGTTTGCTGCTTCGTTTGAGTTTTGTTTTATCAGGAGTTGGTTTGAGTGTTTTTATTATTCAAAAGAAATGAACATTTGTGTCAAATTATCTAATCCACAGTTATCAGGCTTTATCTTTTACTTAGACATCGATCCATTCAAGTTCCAATCTTAAATTTTAGTCTTATCAGTCTGTAATCCAAAAATTATTTTACCCTCAAAGGTCAAAGCATTGGACATACTCAATGGGACGACTTAAAGTGCTAATCATAGACACCAAAGTGAATGGCTAGAGTTGCATTACAAAAATATATCAAAAAAGCCAGCTTACCAAACCCAAAAATAAAAAAAGCCAGCACGAGGATAATTTTCAAATTTTGATTGTTAATTTTTGTGTCAC
Coding sequences of Glyma07g33441
>Glyma07g33441.1   sequence type=CDS   gene model=Glyma07g33441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCTACAGTAGATGAACATGATGAGGTATATGCAGCTCATCATAGACATCCAGGGTATGTTCTACCAGTTGTGGTGCCACCAAATTATGGTCCTCCTCAAATTCCATCCTATGCTCCTCCATACATCAGCAACAGTGTTAGTGTAAGGGGTCCTGTGATTAGGACACAGCGATGGTCAACTGGTCTGTGCCGTTGTACTGATGATCCTGGAAACTGTTTGGTCACTTGCTTCTGCCCCTGTGTTACATTTGGATTGATAGCAGAGATAGTAGATAAAGGCAATACAACTTGCACTTGTGCTGGGGCTATTTATGGGACCCTACTAGCTCTGAGTGGGCTTGCATGCTTGTATTCTTGCTATTATAGGTCCAAACTGAGGGTACAATATGACTTACCAGAGGCTCCATGTATGGACTGTTTAGTTCATTTCTGCTGTGAAACATGTGCTCTATGTCAGGAGTATAGGGAGCTTAAAAACCGTGGATTTGACTTGAGCATAGGGTGGGAAGCCAACATGGAAAGACAAAGGCAAGGAGCTATAGTATCACCAGTAATGTCACAATCTATGACAAGATGA

>Glyma07g33441.2   sequence type=CDS   gene model=Glyma07g33441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCTACAGTAGATGAACATGATGAGGTATATGCAGCTCATCATAGACATCCAGGGTATGTTCTACCAGTTGTGGTGCCACCAAATTATGGTCCTCCTCAAATTCCATCCTATGCTCCTCCATACATCAGCAACAGTGTTAGTGTAAGGGGTCCTGTGATTAGGACACAGCGATGGTCAACTGGTCTGTGCCGTTGTACTGATGATCCTGGAAACTGTTTGGTCACTTGCTTCTGCCCCTGTGTTACATTTGGATTGATAGCAGAGATAGTAGATAAAGGCAATACAACTTGCACTTGTGCTGGGGCTATTTATGGGACCCTACTAGCTCTGAGTGGGCTTGCATGCTTGTATTCTTGCTATTATAGGTCCAAACTGAGGGTACAATATGACTTACCAGAGGCTCCATGTATGGACTGTTTAGTTCATTTCTGCTGTGAAACATGTGCTCTATGTCAGGAGTATAGGGAGCTTAAAAACCGTGGATTTGACTTGAGCATAGGGTGGGAAGCCAACATGGAAAGACAAAGGCAAGGAGCTATAGTATCACCAGTAATGTCACAATCTATGACAAGATGA
Predicted protein sequences of Glyma07g33441
>Glyma07g33441.1   sequence type=predicted peptide   gene model=Glyma07g33441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPTVDEHDEVYAAHHRHPGYVLPVVVPPNYGPPQIPSYAPPYISNSVSVRGPVIRTQRWSTGLCRCTDDPGNCLVTCFCPCVTFGLIAEIVDKGNTTCTCAGAIYGTLLALSGLACLYSCYYRSKLRVQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGFDLSIGWEANMERQRQGAIVSPVMSQSMTR*

>Glyma07g33441.2   sequence type=predicted peptide   gene model=Glyma07g33441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPTVDEHDEVYAAHHRHPGYVLPVVVPPNYGPPQIPSYAPPYISNSVSVRGPVIRTQRWSTGLCRCTDDPGNCLVTCFCPCVTFGLIAEIVDKGNTTCTCAGAIYGTLLALSGLACLYSCYYRSKLRVQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGFDLSIGWEANMERQRQGAIVSPVMSQSMTR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo