Glyma07g33370 - SoyBase

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Report for Sequence Feature Glyma07g33370

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38316614
stop:	38321072
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15695	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF829, transmembrane 53 \| chr2:6834194-6836336 REVERSE LENGTH=420	SoyBase	E_val: 1.00E-151	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2521	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12265	Panther	UNCHARACTERIZED	JGI		ISS
PF05705	PFAM	Eukaryotic protein of unknown function (DUF829)	JGI		ISS
UniRef100_I1KLY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLY6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R179	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R179_ORYSJ	SoyBase	E_val: 8.00E-109	ISS

Expression Patterns of Glyma07g33370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33370

Paralog	Evidence	Comments
Glyma02g15080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g211400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g33370

Limit To All Plant Sequences

>Glyma07g33370.1   sequence type=CDS   gene model=Glyma07g33370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGGAGCTGAGGGTGGTGATGGTGGCTTCGCCGTCAGAGGCGGTAACATCTACTGGGGGAGAAAAGAGGAAACTGATTTCAGAGGAATCGTTGTAATCTTCGCTTGGGTTTCTGTTCCGCAGAACCTGTTACAAGAATTCGTTGATCTGTGTTCTTCTTTGAAGTGGAATTCCCTTGTTTGTTTTGCCCATTATCTATCAGCTTTCCGTGATGAAAGTGCCATGCCATTGGCATTTTGTGTTCTTGATGAACTTATTGAGGAGCTGAGAACTAGGTCATGCCCTGTTGTATTTGCTACTTTTTCTGCTGGGTCAAAAGCCTGTCTGTACAGGGTATTTCAGCTTATTGATGGAAAATGTGCAACTCCGCTCAACTTGCCTAACTATCAATTACTTAGGAACTGTCTTTCTGGACACATATATGATTCTGGTCCAATAGATATTACAAGTGATTTTGGCTTCCGCTTTGCACTACGACCCTCCATTGCAAAAGTGCCTGGACCATCAAAACTTGTTTCTTGGGTAGCAAAATCTGTTACCTCTGGTTTGGATGCGTTATACCTGACTAGATTTGAATCCCAAGCTGCTGAACATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGAGCTCCATTTCTCATTTTATGTTCTGAGAATGATGACCTTGTACGATACCGAAGTATCTATGATTTTGCCCAACAACTACGCAATCTCAATGGTGATGTCAACCTTGTAAATTTCAGTAGCTCCTCCCACCTTGGTCATTACAAACACCATCCAATTCAATATAGAGCTGCTGTGAACCAATTATTAGAGAAGGCTTCTTCAATATATTCACAAAAAATGTTGCTTGAACGAGAAAGAACTGGTATGGATGGTACACAGGATGAGATATCTGAGTTAATCTGTGACCTGCAGAAGGTGGCAATCAATTCAAATAAGAGCCTTAGAAGAGTTGCAGTCGGGCCAACAGACCACTTCTTTTTGCCTAGTTCAGCAGGGCATTACGGTGATAGAGAATCTGGGACTCCACAAGATGAACAAAAAGAAAAATCTGTTTGTGTACCTAGCTTCCCAAGCATCAGTGCTCATAGTGTCCTTGGCCAATTTCTTTTTGATGTTTGTGTTCCGAAGAATGTTGAGGGTTGGGATGTGAAATCTTCTGGGAATCTAAATAGGAAGTCATGTGCTTCAGCTCCAAGGCATTCACTATTCAGAGGTACTAAGCGCATCGGTCGGTCCAAATTATGA

Predicted protein sequences of Glyma07g33370

Limit To All Plant Sequences

>Glyma07g33370.1   sequence type=predicted peptide   gene model=Glyma07g33370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGAEGGDGGFAVRGGNIYWGRKEETDFRGIVVIFAWVSVPQNLLQEFVDLCSSLKWNSLVCFAHYLSAFRDESAMPLAFCVLDELIEELRTRSCPVVFATFSAGSKACLYRVFQLIDGKCATPLNLPNYQLLRNCLSGHIYDSGPIDITSDFGFRFALRPSIAKVPGPSKLVSWVAKSVTSGLDALYLTRFESQAAEHWQALYSSVNFGAPFLILCSENDDLVRYRSIYDFAQQLRNLNGDVNLVNFSSSSHLGHYKHHPIQYRAAVNQLLEKASSIYSQKMLLERERTGMDGTQDEISELICDLQKVAINSNKSLRRVAVGPTDHFFLPSSAGHYGDRESGTPQDEQKEKSVCVPSFPSISAHSVLGQFLFDVCVPKNVEGWDVKSSGNLNRKSCASAPRHSLFRGTKRIGRSKL*

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