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Report for Sequence Feature Glyma07g33340

Feature Type:gene_model
Chromosome:Gm07
Start:38286949
stop:38288530
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g33340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47480AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314 SoyBaseE_val: 5.00E-74ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG1515 KOG Arylacetamide deacetylase JGI ISS
PTHR23024Panther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES JGI ISS
PTHR23024:SF10Panther CARBOXYLESTERASE-RELATED JGI ISS
PF07859PFAM alpha/beta hydrolase fold JGI ISS
UniRef100_G7JMF0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1 n=1 Tax=Medicago truncatula RepID=G7JMF0_MEDTR SoyBaseE_val: 3.00E-110ISS
UniRef100_I1KLY4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLY4_SOYBN SoyBaseE_val: 1.00E-153ISS

Expression Patterns of Glyma07g33340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g33340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g211200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g33340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g33340
>Glyma07g33340.2   sequence type=CDS   gene model=Glyma07g33340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACCACCACAGACGACAGCGAAGAAGTAACCTACGACCTCTCCCCTGTCCTCAAAGTCTACAAAAGCGGTCGCATAGAGAGGCTAGCCGGCACCGCGGTTCTTCCTCCGGGCCTCGACCCCGAAACCAACGTGGAATCGAAAGACATCAAGCTCCCTCTCCTTTTCTACACCCACGGCGGCGCCTTCTGCATCGAAACCCCGTTTTCTCCGAACTACCACAACCTCCTCAACAAGGTTGTTTCTGTTGCTAATGTTGTCGCTGTCTCTGTCCACTACCGGAGGGCATCAGAGCACCCGGTTCCCACTGGCCATGAAGACTCGTGGTGTGCACTCAAATGGCTTAAAGGGGTTGTTTTGGTGCATCCTTTCTTCTGGGGCGAGGAACCGTTTGGTAGTGAAACAAACAGGCCCGATCAAGCGAAGAAGATTCACGATTTGTGGCGGTTTGCGTGCCCTAGTGAGAGTGGATCCGATGACCCGATCATAAACCCGATTAAGGATCCGAAGCTGGGGAAGCTTGCTTGTGAAAGATTGCTTCTTTGTGTTGCTGAGAAGGATTTGGTGAGGGATAGGGGTTTGTACTATAAAGAGTTGCTTGAGAAGAATGGGTGGTTTGGAGTTGCTGAAGTGGTGGAGACGAAGGATGAGGACCATGTTTTTCATTTGTTCAAACCGAACTGTGAGAATGCTCTAGTTTTGATCGACCAGATT
Predicted protein sequences of Glyma07g33340
>Glyma07g33340.2   sequence type=predicted peptide   gene model=Glyma07g33340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTTTDDSEEVTYDLSPVLKVYKSGRIERLAGTAVLPPGLDPETNVESKDIKLPLLFYTHGGAFCIETPFSPNYHNLLNKVVSVANVVAVSVHYRRASEHPVPTGHEDSWCALKWLKGVVLVHPFFWGEEPFGSETNRPDQAKKIHDLWRFACPSESGSDDPIINPIKDPKLGKLACERLLLCVAEKDLVRDRGLYYKELLEKNGWFGVAEVVETKDEDHVFHLFKPNCENALVLIDQI






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