Glyma07g33330 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g33330

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38270766
stop:	38272331
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47480	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:17417623-17419296 FORWARD LENGTH=314	SoyBase	E_val: 7.00E-104	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_G7JMF0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1 n=1 Tax=Medicago truncatula RepID=G7JMF0_MEDTR	SoyBase	E_val: 2.00E-168	ISS
UniRef100_I1KLY3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLY3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g33330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33330

Paralog	Evidence	Comments
Glyma02g15120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g211100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g33330

Limit To All Plant Sequences

>Glyma07g33330.1   sequence type=CDS   gene model=Glyma07g33330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAACAACTTCCACAGAAAGTGAAGTAGCCTATGACATCCCACCCATCCTCAAAGTCTACAAAAACGGTCGCATAGAGAGGCTCGCAGGCTTCGAGGTTGTTCCTCCGGGTCTCGATCCCGAAACTAACGTGGAATCGAAAGACGTCGTAATCGCCGTAAAAGACGGCGTATCCGCCAGGCTTTACATTCCGAAAACCACTTACCCACCAACGCAAAAGCTTCCTATTTTAGTTTACTTCCACGGCGGCGCCTTCATAATTGGAACACCGTTTTCTCCGAACTACCACAACCTACTCAACAACGTTGTTTCAAAGGCTAATGTGATAGGCGTTTCCGTCCACTACAGGAGGGCACCGGAGCACCCGGTTCCCATTGCCCACGAAGATTCGTGGAGTGCCCTCAAATGGGTCGCTTCCCATATCGGTGGAAACGGTGTTGAAGAGTGGCTGAACAAATACGGAGATTTTGAGAAAGTGTTCGTTGCCGGCGACAGCGCCGGCGCCAACATCGCGAGCTATTTGGGCATTCGGGTCGGGTTAGAACAGTTACCTGGTTTGAAGCTAGAAGGGGTTGCTTTGGTGCATCCTTATTTCTGGGGCACGGAGCCGCTGGAGTGTGAGGCGGAGCGGGCAGAAGGCACTGCCAAGGTGCACCAGTTGTGGCGATTTACGTGCCCCACCACGACGGGATCCGACGACCCGATTATCAACCCGGGTCAGGATCCGAATCTGGGGAAACTGGCCTGTGGGAGAGTGCTTGTTTGTGTGGCGGAGAAGGATTTGCTGAAGGACAGGGGTTGGCACTACAAAGAGTTGCTTCAGAAGAGTGATTGGCCTGGAGTTGTGGACGTGGTTGAGACTAAGGACGAGGATCACGTGTTTCATATGTCGGATCCGAATTGTGACAATGCTAAGGCTTTGCTTAACCAGATTGTTTCCTTTATCAAATAG

Predicted protein sequences of Glyma07g33330

Limit To All Plant Sequences

>Glyma07g33330.1   sequence type=predicted peptide   gene model=Glyma07g33330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTTSTESEVAYDIPPILKVYKNGRIERLAGFEVVPPGLDPETNVESKDVVIAVKDGVSARLYIPKTTYPPTQKLPILVYFHGGAFIIGTPFSPNYHNLLNNVVSKANVIGVSVHYRRAPEHPVPIAHEDSWSALKWVASHIGGNGVEEWLNKYGDFEKVFVAGDSAGANIASYLGIRVGLEQLPGLKLEGVALVHPYFWGTEPLECEAERAEGTAKVHQLWRFTCPTTTGSDDPIINPGQDPNLGKLACGRVLVCVAEKDLLKDRGWHYKELLQKSDWPGVVDVVETKDEDHVFHMSDPNCDNAKALLNQIVSFIK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain