Glyma07g33300 - SoyBase

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Report for Sequence Feature Glyma07g33300

Feature Type:	gene_model
Chromosome:	Gm07
Start:	38216849
stop:	38221591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g33300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19130	AT	Annotation by Michelle Graham. TAIR10: RNA-binding protein 47B \| chr3:6611398-6613823 REVERSE LENGTH=435	SoyBase	E_val: 6.00E-172	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(A) RNA binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF67	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7JMG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA Binding Protein n=1 Tax=Medicago truncatula RepID=G7JMG2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KLY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLY0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g33300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33300

Paralog	Evidence	Comments
Glyma02g15190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g210800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g33300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g33300

Limit To All Plant Sequences

>Glyma07g33300.1   sequence type=CDS   gene model=Glyma07g33300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACCCAGTTCCAACGGGGATCTGAATAATAACCAGCAGGGTCAGGTTCAGCAACAGCAGCAGCAGTGGGCGGCGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCGGCCACAGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCGTACGCTCACCCCCATTACCCGCCGCCGCCGCCGCCTCCTCAGTCGTCTCACCATCACCACCACAAACAGGCCGCAGCCGCGGCGGCGGCTGCGGCCTCCTCCGACGAGATCAGGACCGTCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGAAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTGGAGTTCTATTCACGAGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACGATGATGCCCAATACAGATCAGGCATTCCGTCTGAATTGGGCCACATTCAGTGCGGGGGAAAGGCGTTCTTCCGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTGGCCGATATTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACCGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTACCAACAACAATATTCTTCTCAAGCTGTGCTATTGGCCGGTGGACACGCAGCTAATGGTGCTGTGGCCCAAGGTTCCCATTCTGAAGGGGATTTAAACAACACCACTATATTTGTTGGAGGGCTTGATTCTGACACCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCAGACAGAAAGAATGCTGAGGAAGCAATTCACGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGACTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCTGATTCCAATGGAGGCTATTTTGGTGGTCAGAGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCAACTGCAATTCAAGGGGCTTCCTAA

Predicted protein sequences of Glyma07g33300

Limit To All Plant Sequences

>Glyma07g33300.1   sequence type=predicted peptide   gene model=Glyma07g33300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQPSSNGDLNNNQQGQVQQQQQQWAAAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYAHPHYPPPPPPPQSSHHHHHKQAAAAAAAAASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVLLAGGHAANGAVAQGSHSEGDLNNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGYFGGQSYGGHGFAVRQNQDIAMQPATAIQGAS*

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