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Report for Sequence Feature Glyma07g33280

Feature Type:gene_model
Chromosome:Gm07
Start:38202882
stop:38203796
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g33280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15760AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1645) | chr2:6865807-6866754 REVERSE LENGTH=315 SoyBaseE_val: 7.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF07816PFAM Protein of unknown function (DUF1645) JGI ISS
UniRef100_D7L4F9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4F9_ARALL SoyBaseE_val: 9.00E-62ISS
UniRef100_I1KLX9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLX9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g33280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g33280
ParalogEvidenceComments
Glyma02g15200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g33280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g210700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g33280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g33280
>Glyma07g33280.1   sequence type=CDS   gene model=Glyma07g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGAAGTGATGGTTCCACCGGTGGACTTCAACTTCGACAGCAACTGCTCCTCCCCCTTCATCACCGCCCCTTCAAGCCCCCAATTCTTTGCTGCCTCCAACAAACCAAACTTCTTCTTCTTCAGCGCCCCCACCAGCCCCACACGTGCCACCTCCTCCTCCTTCCATGAAGAAGAACAAGATTTCCAGTTCAATTTCAGCGGCCACCTCGACCGCCCTTCTCTCTCCGCCGCTGAGCTCTTTGACGGCGGAAAAATCCGTCCTTTGAAGCCGCCGCCGCTGCTTCAGTCTCCGGTAACATCCCCAAGGTCGAAACTTTCTCCCCGCAACAAGAAGAAAGACTTGGACCCTTTTGCATTGGCAATGAAAGAAACTCTCAGAAGTGAAGAAAAAACACGAGGGAGGGAAAGGGTTTCGGTTTCGTTCTCTGGTCGTAAAGGAAGCAGGTCGTTGTCCCCTCTGAGAATCTCCGTCGTGTGCGACTCCGAAGACAAAAACGTTTCTTCCTCGACAAGCAACATCAACAACTCAAAAGCCTCGTTTTTGTCTTCGATTCCCTTCACGAGAAAATGGAGGTTCAAGGATTTTCTCCTCTTCCGAAGCGCCTCTGAAGGAAGAGCAACCGACAAGGACCCTCTGAGGAGAAAATACGCAGTTCTGTCGAAGAACAACGAGGATGTTCGGGACTGCAGCTTCCGGTCCACCGAGAGTTCTTCCGGTTCGATCTCGAAGCGGCACGGGCCGGTCTCGGCCCACGAGCTGCATTACACGCTGAACCGGGCCGCGTCGGAAGAGATGAAGAAGAAGACTTTCTTGCCTTACAAGCAGGGCTTGTTGGGATGCTTGGGCTTTAACCCTGGTATGCATCATCATTTTTCTAAGAGGGTTGGGTCTTTGACGCGTTCTTAA
Predicted protein sequences of Glyma07g33280
>Glyma07g33280.1   sequence type=predicted peptide   gene model=Glyma07g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEVMVPPVDFNFDSNCSSPFITAPSSPQFFAASNKPNFFFFSAPTSPTRATSSSFHEEEQDFQFNFSGHLDRPSLSAAELFDGGKIRPLKPPPLLQSPVTSPRSKLSPRNKKKDLDPFALAMKETLRSEEKTRGRERVSVSFSGRKGSRSLSPLRISVVCDSEDKNVSSSTSNINNSKASFLSSIPFTRKWRFKDFLLFRSASEGRATDKDPLRRKYAVLSKNNEDVRDCSFRSTESSSGSISKRHGPVSAHELHYTLNRAASEEMKKKTFLPYKQGLLGCLGFNPGMHHHFSKRVGSLTRS*






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