SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43650 | AT | Annotation by Michelle Graham. TAIR10: Sas10/U3 ribonucleoprotein (Utp) family protein | chr2:18099430-18103147 FORWARD LENGTH=654 | SoyBase | E_val: 8.00E-147 | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3118 | KOG | Disrupter of silencing SAS10 | JGI | ISS | |
| PTHR13237 | Panther | SOMETHING ABOUT SILENCING PROTEIN SAS10 | JGI | ISS | |
| PTHR13237:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04000 | PFAM | Sas10/Utp3/C1D family | JGI | ISS | |
| PF09368 | PFAM | Sas10 C-terminal domain | JGI | ISS | |
| UniRef100_G7JNK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Something about silencing protein n=2 Tax=Medicago truncatula RepID=G7JNK9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023384BC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023384BC related cluster n=1 Tax=unknown RepID=UPI00023384BC | SoyBase | E_val: 0 | ISS |
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Glyma07g33010 not represented in the dataset |
Glyma07g33010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g15490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g208300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g33010.2 sequence type=transcript gene model=Glyma07g33010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTTAATTCGCATCCCTTATTTTTTGCTAGGTTTTCCCATTCTCTGGCCTTAAACCCTCACCTTTCGCGCCCTCACTGCACTGGTGCGAGACTCGTGAGTGTGAAGAGACAAAGGTGCAGTTCTAGGGTTTGGTGGTGAAGAACAGAGAACACAGGATGGGGAAGAAAAGAGGTACAAATTATCAGAAGAAAGATACCAAAAGCTCTAAAAGTAAAACAAGTTCTCGTCATGCTACTTATTCCAGTGACGACATGGACGACGAAATTGATGCCTTTCATAAGCAGAGGGACATTGTCCCCCTTGACATTAATGATGATGCTGAAGAATCGGAAGACGAGGAGCTCCCTATTTTTGATGTTCAGGATGTTGATGAAGATGAGGATGAGGATGAGGATGACGAAGATGATGATGATGATGATGGGGATGACGATGTGGCGAAGATGATTAGGCAAAGGAAATATTTACGGGCAAAGTTTGGTGGAGGAGATGATGAAATGCATGATGTTGATGATGAGGAAGATGAGGAAGATTATAAACTTACATTAGGTGGGAAAAAATTCTCACACGGTGCTGAGAATCGAAATTTTGAGATACAATCAAGTGATGATGAGGCCCCAAAAGAAGAGGAAGAATTGGCATTACAAATACAAAGGGAGAAGGCAAAATCCTTAACAATGGAAGACTATGACCTTGTGGATATAAGTGAAGACAAAGATAACGAAAAATTAACTTTGAAGGATGTGTCTGATAAAGGAAACGAAGCAATAAAATCACTGGATAGAGATATAATTTTCACTGTTGATGAACTGAATGCTTTGTCAAAGGAGGAGCAAATGAATGCTTTATACAGGTCTGCTCCAGAATTAGTTGATTGGTTGTCAGAACTAAATGAGGTGCACAGACAACTCGAATGTGAAATTAACCCATTTTTAAGCAAGGTTAAAAAGGGGGAAATAGTTATGAAAGGAGAAGTGCGTTATTTTGAGTTGAAGCAGCTTATTTTTCTGTCCTATTGCCAAGCAATAACGTTCTTCCTTCTCCTCAAGTCTGAAGGGCAGCCAGTCCATGATCATCCCATAATAGCTCGCCTTGAAGAGATCAAGAAATTATTGGATCAGATAAAACAACTTGACACAAAACTTCCATTTGAACTTGAGGACATTCTTAAAGAAAATAATGGGTTAGAAACAGTACTAAATTCAGATATTGAGAACGCTCCAACGACAAATGATTCTATCGTTAAAAACCAAGAGCAGCCTCTTGTCTCTGCCAAATCAACAGAAGAAACAGTGGTGCCTAACAAGCAAGTTGAGATACAAGAATTGGAATCCTCAAAGGATGGTGTACAGAAAACAAGAAAAGTTAAACCTCAGAAGGATCACATTGGCGCACAGAGTTTGGAAATGCTAAAAGTTAGAGCTTCCCTCGAGGAAAAACTGAAAAACAAGGGTCTGTACAGCTCCATTGCTCCAAAGCCTAGTAATGCATTAAAGCGTTTGAGACCAGTTAATGGCCAGCTCGAAACATATGATGATTTTAATGATGATACCATGGATGCCAATGGGGAAGCTAGATTGATTAATGGTTATGGCTCAAAACAAGTTTCACAATTCCTTAATGCAAATATGAAGAAGCCCAAGGTGGTTTCTGGTGATGATGATTTACCAAAGAGAGATGATATTGGTGAAAGGCGAAGGAAACACGAGCTTCGGGTGTTGGCTGGTGCTGGAATTAGGACTGAGGATGATGATGGTGATGATCAGATGACTGATCTTGGACCTAATGAGGTTACCGATGAAGAGGATGACGGTGGAAGTGGGGACTCAGAAAATGAATTTTACAAACAAGTGGAACAACTGCGAGCTGCAAAACTTGCAGCAAAAGCTGAGACTTACTCAAGGAACACTTCAGTCTCTTCATTGCCAGAGATTGTAGAAGGAAAGCGCCATATTTCTTCTCAGATTGAGAAGAATAGGGGACTAACCCGCAATCGCAACAAGGCAAAAAAGAATCCCAGAAAGAATTACAAGCTCAAGCATCAAAAGGCTGTTAAGAACCGCAAGGGGCAAGTTCAGAGTATCAAGAGGCCGACTGCTCCTTATGGTGGAGAATCCTCTGGAATTAATGCGGCTATCAGTAGAAGCATCAGATTCAAGAGCTGATATTGTTATTAGCTTTACAATATCTTTCCAAAATTATCCAATTTTAAATCATATACGTAGATGGAAGTATCTTGTTTGCTTCGGCGAAAGTATAGCCTGTAGGTGTTTGTTTGGGAGATAAGCATATATGGCATATTAAGTTATTTGCAATTTTGCCAGTTTTGATCCTGTATTTTCAGAGTAATGTTTTAGTATTTTACTTGTCAACTTTGTAAGTGACACTAAAAGAGTTCCAGAGTGCTGGAATGAGCTTTACATGAATTCTAACAGGCGAAAATTATAATAGTGTTGGATTTTTCGTTGACTAAGCGTGTTAGAGAAAAAGTAATAACATTTTTTGACAGACATACGTTAAGATCTTTCTTAACGAAAAATTAAATACAAGAACTGAA
>Glyma07g33010.1 sequence type=CDS gene model=Glyma07g33010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAAAGAGGTACAAATTATCAGAAGAAAGATACCAAAAGCTCTAAAAGTAAAACAAGTTCTCGTCATGCTACTTATTCCAGTGACGACATGGACGACGAAATTGATGCCTTTCATAAGCAGAGGGACATTGTCCCCCTTGACATTAATGATGATGCTGAAGAATCGGAAGACGAGGAGCTCCCTATTTTTGATGTTCAGGATGTTGATGAAGATGAGGATGAGGATGAGGATGACGAAGATGATGATGATGATGATGGGGATGACGATGTGGCGAAGATGATTAGGCAAAGGAAATATTTACGGGCAAAGTTTGGTGGAGGAGATGATGAAATGCATGATGTTGATGATGAGGAAGATGAGGAAGATTATAAACTTACATTAGGTGGGAAAAAATTCTCACACGGTGCTGAGAATCGAAATTTTGAGATACAATCAAGTGATGATGAGGCCCCAAAAGAAGAGGAAGAATTGGCATTACAAATACAAAGGGAGAAGGCAAAATCCTTAACAATGGAAGACTATGACCTTGTGGATATAAGTGAAGACAAAGATAACGAAAAATTAACTTTGAAGGATGTGTCTGATAAAGGAAACGAAGCAATAAAATCACTGGATAGAGATATAATTTTCACTGTTGATGAACTGAATGCTTTGTCAAAGGAGGAGCAAATGAATGCTTTATACAGGTCTGCTCCAGAATTAGTTGATTGGTTGTCAGAACTAAATGAGGTGCACAGACAACTCGAATGTGAAATTAACCCATTTTTAAGCAAGGTTAAAAAGGGGGAAATAGTTATGAAAGGAGAAGTGCGTTATTTTGAGTTGAAGCAGCTTATTTTTCTGTCCTATTGCCAAGCAATAACGTTCTTCCTTCTCCTCAAGTCTGAAGGGCAGCCAGTCCATGATCATCCCATAATAGCTCGCCTTGAAGAGATCAAGAAATTATTGGATCAGATAAAACAACTTGACACAAAACTTCCATTTGAACTTGAGGACATTCTTAAAGAAAATAATGGGTTAGAAACAGTACTAAATTCAGATATTGAGAACGCTCCAACGACAAATGATTCTATCGTTAAAAACCAAGAGCAGCCTCTTGTCTCTGCCAAATCAACAGAAGAAACACCTAACAAGCAAGTTGAGATACAAGAATTGGAATCCTCAAAGGATGGTGTACAGAAAACAAGAAAAGTTAAACCTCAGAAGGATCACATTGGCGCACAGAGTTTGGAAATGCTAAAAGTTAGAGCTTCCCTCGAGGAAAAACTGAAAAACAAGGGTCTGTACAGCTCCATTGCTCCAAAGCCTAGTAATGCATTAAAGCGTTTGAGACCAGTTAATGGCCAGCTCGAAACATATGATGATTTTAATGATGATACCATGGATGCCAATGGGGAAGCTAGATTGATTAATGGTTATGGCTCAAAACAAGTTTCACAATTCCTTAATGCAAATATGAAGAAGCCCAAGGTGGTTTCTGGTGATGATGATTTACCAAAGAGAGATGATATTGGTGAAAGGCGAAGGAAACACGAGCTTCGGGTGTTGGCTGGTGCTGGAATTAGGACTGAGGATGATGATGGTGATGATCAGATGACTGATCTTGGACCTAATGAGGTTACCGATGAAGAGGATGACGGTGGAAGTGGGGACTCAGAAAATGAATTTTACAAACAAGTGGAACAACTGCGAGCTGCAAAACTTGCAGCAAAAGCTGAGACTTACTCAAGGAACACTTCAGTCTCTTCATTGCCAGAGATTGTAGAAGGAAAGCGCCATATTTCTTCTCAGATTGAGAAGAATAGGGGACTAACCCGCAATCGCAACAAGGCAAAAAAGAATCCCAGAAAGAATTACAAGCTCAAGCATCAAAAGGCTGTTAAGAACCGCAAGGGGCAAGTTCAGAGTATCAAGAGGCCGACTGCTCCTTATGGTGGAGAATCCTCTGGAATTAATGCGGCTATCAGTAGAAGCATCAGATTCAAGAGCTGA >Glyma07g33010.2 sequence type=CDS gene model=Glyma07g33010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAAAGAGGTACAAATTATCAGAAGAAAGATACCAAAAGCTCTAAAAGTAAAACAAGTTCTCGTCATGCTACTTATTCCAGTGACGACATGGACGACGAAATTGATGCCTTTCATAAGCAGAGGGACATTGTCCCCCTTGACATTAATGATGATGCTGAAGAATCGGAAGACGAGGAGCTCCCTATTTTTGATGTTCAGGATGTTGATGAAGATGAGGATGAGGATGAGGATGACGAAGATGATGATGATGATGATGGGGATGACGATGTGGCGAAGATGATTAGGCAAAGGAAATATTTACGGGCAAAGTTTGGTGGAGGAGATGATGAAATGCATGATGTTGATGATGAGGAAGATGAGGAAGATTATAAACTTACATTAGGTGGGAAAAAATTCTCACACGGTGCTGAGAATCGAAATTTTGAGATACAATCAAGTGATGATGAGGCCCCAAAAGAAGAGGAAGAATTGGCATTACAAATACAAAGGGAGAAGGCAAAATCCTTAACAATGGAAGACTATGACCTTGTGGATATAAGTGAAGACAAAGATAACGAAAAATTAACTTTGAAGGATGTGTCTGATAAAGGAAACGAAGCAATAAAATCACTGGATAGAGATATAATTTTCACTGTTGATGAACTGAATGCTTTGTCAAAGGAGGAGCAAATGAATGCTTTATACAGGTCTGCTCCAGAATTAGTTGATTGGTTGTCAGAACTAAATGAGGTGCACAGACAACTCGAATGTGAAATTAACCCATTTTTAAGCAAGGTTAAAAAGGGGGAAATAGTTATGAAAGGAGAAGTGCGTTATTTTGAGTTGAAGCAGCTTATTTTTCTGTCCTATTGCCAAGCAATAACGTTCTTCCTTCTCCTCAAGTCTGAAGGGCAGCCAGTCCATGATCATCCCATAATAGCTCGCCTTGAAGAGATCAAGAAATTATTGGATCAGATAAAACAACTTGACACAAAACTTCCATTTGAACTTGAGGACATTCTTAAAGAAAATAATGGGTTAGAAACAGTACTAAATTCAGATATTGAGAACGCTCCAACGACAAATGATTCTATCGTTAAAAACCAAGAGCAGCCTCTTGTCTCTGCCAAATCAACAGAAGAAACAGTGGTGCCTAACAAGCAAGTTGAGATACAAGAATTGGAATCCTCAAAGGATGGTGTACAGAAAACAAGAAAAGTTAAACCTCAGAAGGATCACATTGGCGCACAGAGTTTGGAAATGCTAAAAGTTAGAGCTTCCCTCGAGGAAAAACTGAAAAACAAGGGTCTGTACAGCTCCATTGCTCCAAAGCCTAGTAATGCATTAAAGCGTTTGAGACCAGTTAATGGCCAGCTCGAAACATATGATGATTTTAATGATGATACCATGGATGCCAATGGGGAAGCTAGATTGATTAATGGTTATGGCTCAAAACAAGTTTCACAATTCCTTAATGCAAATATGAAGAAGCCCAAGGTGGTTTCTGGTGATGATGATTTACCAAAGAGAGATGATATTGGTGAAAGGCGAAGGAAACACGAGCTTCGGGTGTTGGCTGGTGCTGGAATTAGGACTGAGGATGATGATGGTGATGATCAGATGACTGATCTTGGACCTAATGAGGTTACCGATGAAGAGGATGACGGTGGAAGTGGGGACTCAGAAAATGAATTTTACAAACAAGTGGAACAACTGCGAGCTGCAAAACTTGCAGCAAAAGCTGAGACTTACTCAAGGAACACTTCAGTCTCTTCATTGCCAGAGATTGTAGAAGGAAAGCGCCATATTTCTTCTCAGATTGAGAAGAATAGGGGACTAACCCGCAATCGCAACAAGGCAAAAAAGAATCCCAGAAAGAATTACAAGCTCAAGCATCAAAAGGCTGTTAAGAACCGCAAGGGGCAAGTTCAGAGTATCAAGAGGCCGACTGCTCCTTATGGTGGAGAATCCTCTGGAATTAATGCGGCTATCAGTAGAAGCATCAGATTCAAGAGCTGA
>Glyma07g33010.1 sequence type=predicted peptide gene model=Glyma07g33010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKRGTNYQKKDTKSSKSKTSSRHATYSSDDMDDEIDAFHKQRDIVPLDINDDAEESEDEELPIFDVQDVDEDEDEDEDDEDDDDDDGDDDVAKMIRQRKYLRAKFGGGDDEMHDVDDEEDEEDYKLTLGGKKFSHGAENRNFEIQSSDDEAPKEEEELALQIQREKAKSLTMEDYDLVDISEDKDNEKLTLKDVSDKGNEAIKSLDRDIIFTVDELNALSKEEQMNALYRSAPELVDWLSELNEVHRQLECEINPFLSKVKKGEIVMKGEVRYFELKQLIFLSYCQAITFFLLLKSEGQPVHDHPIIARLEEIKKLLDQIKQLDTKLPFELEDILKENNGLETVLNSDIENAPTTNDSIVKNQEQPLVSAKSTEETPNKQVEIQELESSKDGVQKTRKVKPQKDHIGAQSLEMLKVRASLEEKLKNKGLYSSIAPKPSNALKRLRPVNGQLETYDDFNDDTMDANGEARLINGYGSKQVSQFLNANMKKPKVVSGDDDLPKRDDIGERRRKHELRVLAGAGIRTEDDDGDDQMTDLGPNEVTDEEDDGGSGDSENEFYKQVEQLRAAKLAAKAETYSRNTSVSSLPEIVEGKRHISSQIEKNRGLTRNRNKAKKNPRKNYKLKHQKAVKNRKGQVQSIKRPTAPYGGESSGINAAISRSIRFKS* >Glyma07g33010.2 sequence type=predicted peptide gene model=Glyma07g33010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKRGTNYQKKDTKSSKSKTSSRHATYSSDDMDDEIDAFHKQRDIVPLDINDDAEESEDEELPIFDVQDVDEDEDEDEDDEDDDDDDGDDDVAKMIRQRKYLRAKFGGGDDEMHDVDDEEDEEDYKLTLGGKKFSHGAENRNFEIQSSDDEAPKEEEELALQIQREKAKSLTMEDYDLVDISEDKDNEKLTLKDVSDKGNEAIKSLDRDIIFTVDELNALSKEEQMNALYRSAPELVDWLSELNEVHRQLECEINPFLSKVKKGEIVMKGEVRYFELKQLIFLSYCQAITFFLLLKSEGQPVHDHPIIARLEEIKKLLDQIKQLDTKLPFELEDILKENNGLETVLNSDIENAPTTNDSIVKNQEQPLVSAKSTEETVVPNKQVEIQELESSKDGVQKTRKVKPQKDHIGAQSLEMLKVRASLEEKLKNKGLYSSIAPKPSNALKRLRPVNGQLETYDDFNDDTMDANGEARLINGYGSKQVSQFLNANMKKPKVVSGDDDLPKRDDIGERRRKHELRVLAGAGIRTEDDDGDDQMTDLGPNEVTDEEDDGGSGDSENEFYKQVEQLRAAKLAAKAETYSRNTSVSSLPEIVEGKRHISSQIEKNRGLTRNRNKAKKNPRKNYKLKHQKAVKNRKGQVQSIKRPTAPYGGESSGINAAISRSIRFKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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