Glyma07g32990 - SoyBase

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Report for Sequence Feature Glyma07g32990

Feature Type:	gene_model
Chromosome:	Gm07
Start:	37878534
stop:	37883130
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g32990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62460	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr5:25075545-25077072 FORWARD LENGTH=307	SoyBase	E_val: 3.00E-43	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF12428	PFAM	Protein of unknown function (DUF3675)	JGI		ISS
UniRef100_B9SX71	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9SX71_RICCO	SoyBase	E_val: 9.00E-75	ISS
UniRef100_UPI00023384BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023384BB related cluster n=1 Tax=unknown RepID=UPI00023384BB	SoyBase	E_val: 4.00E-178	ISS

Expression Patterns of Glyma07g32990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g32990

Paralog	Evidence	Comments
Glyma02g15510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g32990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g208100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g32990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g32990

Limit To All Plant Sequences

>Glyma07g32990.3   sequence type=transcript   gene model=Glyma07g32990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTGCGTAGACAAGCCAGAGAAGCGGTTTGTTCCGTAAATTCCGTCAACGTACCATTGGCATTTGATAGTGGTCTTACCTTTTTGGAACCCACGCCTGCACACTCACTGCACCACTCTTCCCTTGTCCTTTTCCCTTCTCTCTTTTTTTCCCAACACAAAACCTACATTACAGCCTCTCCACGGTGTCTGTCTCTCTCACTCAAAAAATGGTGAACGACTTCATTGTCTGCATTGACCGGATCATAGCCTCCACGACCTGTTTTGGATCAGTGAATGAAAAACACTGTGATGGTGTTGACCCAGTTATAATCCCCGTCTCTGACAATGGTGGAAAAGTGTGCTCCTCTTCTTCTTCTTCTTCATCTTCAAACAAGGATGATGATGTTGTTGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGACCAAGCACAAGCCATGGAGGCACCTTGTTCTTGCAATGGCACTCTCAAGTTTGCTCATAGAAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCGGTCAGAAGCAATGCAATTATGACGAATGATATTAGGCAAGAATGGGGGCACAATGCTGATCTCCGTGTGGCTCTAGCTTCAGCAGAGCAGCAGTTGCTGCAAACTGAATATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTTCCTTCGCTCTGTGACTCTCATTCTTTAATGGTCACAAAGAACTCTGTAACTGGGCAAGATGCATCGATAATCTTTAATTTTGAGGTGTCACTCCTTCAATTTGCTGGTGTTCTTTTGCCATGCTTTGCAATGGCACGTTCCTGGTATGCCATACAGAACCGTAGGAGAAGACAGGGCTGAGTGATGCAGAACATAGATGTTATCTTGGCTGGCTGTCACGAAAATCGAGCAGTTACATATAGATGCTACATGCTTTTGTTTGTCAAATGTATTGAAGTTGTATGTATGCATAGACCATGCCATGGTAAAATATCACAAAATGAAGCGATCTTTCTACGCAATTTTCTGCTCCTATTTCTTCCTGTGGAAAAGGAAAGGAATAAAGTAGCAGCATGTCTCTAGTGTCGTGCACTACACACAAACGTGAACATTAGCGTTTAGATAGGGGTGGAAGTCAGAAATTTTTATGAGGGGCAAAAAGCTGTTAGTTTCTATATGTTTTACAGCGATAGGAATGGTATCAAAATTTCAGGCCTTTAAATTTTCGCTCATCAAACACGATGCACCAATTTACTATTTCTCATCATCATCATTGGCATAATCATGAATAAAGTTCTGCAATAGCAGATATATCATCTGAGCTAAAGGATTTGTCGTAGTAGGAATATTTAGAATTTATAGTTTTGCTTAGTGTAAGAAGCTTTATGTATATTGAAATTACTATTTTCTTTCCATTGATAATTTGTAAACATTATAAAAATCTCTAATGTTACTGCTCTACTCTTTTGATGACGAGGACCAATTAT

Coding sequences of Glyma07g32990

Limit To All Plant Sequences

>Glyma07g32990.2   sequence type=CDS   gene model=Glyma07g32990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGACTTCATTGTCTGCATTGACCGGATCATAGCCTCCACGACCTGTTTTGGATCAGTGAATGAAAAACACTGTGATGGTGTTGACCCAGTTATAATCCCCGTCTCTGACAATGGTGGAAAAGTGTGCTCCTCTTCTTCTTCTTCTTCATCTTCAAACAAGGATGATGATGTTGTTGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGACCAAGCACAAGCCATGGAGGCACCTTGTTCTTGCAATGGCACTCTCAAGTTTGCTCATAGAAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCGGTCAGAAGCAATGCAATTATGACGAATGATATTAGGCAAGAATGGGGGCACAATGCTGATCTCCGTGTGGCTCTAGCTTCAGCAGAGCAGCAGTTGCTGCAAACTGAATATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTTCCTTCGCTCTGTGACTCTCATTATGCTGATGATTTTGCTTGTACGTGAAGCTTTAATGGTCACAAAGAACTCTGTAACTGGGCAAGATGCATCGATAATCTTTAATTTTGAGGTGTCACTCCTTCAATTTGCTGGTGTTCTTTTGCCATGCTTTGCAATGGCACGTTCCTGGTATGCCATACAGAACCGTAGGAGAAGACAGGGCTGA

>Glyma07g32990.3   sequence type=CDS   gene model=Glyma07g32990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGACTTCATTGTCTGCATTGACCGGATCATAGCCTCCACGACCTGTTTTGGATCAGTGAATGAAAAACACTGTGATGGTGTTGACCCAGTTATAATCCCCGTCTCTGACAATGGTGGAAAAGTGTGCTCCTCTTCTTCTTCTTCTTCATCTTCAAACAAGGATGATGATGTTGTTGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGACCAAGCACAAGCCATGGAGGCACCTTGTTCTTGCAATGGCACTCTCAAGTTTGCTCATAGAAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCGGTCAGAAGCAATGCAATTATGACGAATGATATTAGGCAAGAATGGGGGCACAATGCTGATCTCCGTGTGGCTCTAGCTTCAGCAGAGCAGCAGTTGCTGCAAACTGAATATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTTCCTTCGCTCTGTGACTCTCATTCTTTAA

Predicted protein sequences of Glyma07g32990

Limit To All Plant Sequences

>Glyma07g32990.2   sequence type=predicted peptide   gene model=Glyma07g32990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNDFIVCIDRIIASTTCFGSVNEKHCDGVDPVIIPVSDNGGKVCSSSSSSSSSNKDDDVVVVVECRICQEEDQAQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIMTNDIRQEWGHNADLRVALASAEQQLLQTEYEDYAMSQTSSIAFLRSVTLIMLMILLVREALMVTKNSVTGQDASIIFNFEVSLLQFAGVLLPCFAMARSWYAIQNRRRRQG*

>Glyma07g32990.3   sequence type=predicted peptide   gene model=Glyma07g32990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNDFIVCIDRIIASTTCFGSVNEKHCDGVDPVIIPVSDNGGKVCSSSSSSSSSNKDDDVVVVVECRICQEEDQAQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIMTNDIRQEWGHNADLRVALASAEQQLLQTEYEDYAMSQTSSIAFLRSVTLIL*

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