SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59660 | AT | Annotation by Michelle Graham. TAIR10: C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 | SoyBase | E_val: 3.00E-104 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF02893 | PFAM | GRAM domain | JGI | ISS | |
| UniRef100_G7JNL8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GRAM domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JNL8_MEDTR | SoyBase | E_val: 1.00E-131 | ISS |
| UniRef100_I1KLV4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KLV4_SOYBN | SoyBase | E_val: 6.00E-143 | ISS |
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Glyma07g32971 not represented in the dataset |
Glyma07g32971 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g207900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g32971.1 sequence type=CDS gene model=Glyma07g32971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCCCTGGTTCAAGAAATCCAATGTGGGGTGGGGGCAAGGGTGAGGTGTTCAATTTTTCCGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGTATAAATGTCGGGATAATGCTATTCTTGGTTCAGTGACTGTTCCACTTAAAAGCAATGGTCAAACTGGTCCAGTGTGGCATACTTTAGATAGCCCATCAGGGAAGGTTTCTCTTCAAATAGAAACAAAAAAACTACCTGCAAATGTTTCTAGGATACATTGTTATGGAGAAGCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAAACTATATTTGATCTTCATTCTGACGAGGTTATTGATCATAGATATATTTGTGCACTTGAGACGTCATTCTTGTACCAAGGTGATATGTATGTCTCAGCATGGAACATTTGTTTCTATTCCAATATGTTCTCAAAGGAAATGAAGATTCAAAGGAGTGAACTTGCATTGATTAATCCTGCTATAACAATTATTCTTCGCAAGGGTGCTGGTGGACATGGTGTCCCTCCTTTCAGTCCTTTGGGAAGTCCTGATGGTAGGGTCGGATGTATGTTTGCATCATTTGTGGACAGGAATAAAGCATTAGAAAATCTACAGCGTGCATCAAAGAATTTCCATGAAATTTTAGAAGCTGGGAAGGAAAATGCAGAGCCAGAGCTACGTGCACTTAGCGATTCTGCCAGAGGAAGTAAGGCACTGGATAAGGCTCTTGAAGAAAGCATGCCAAAAACTGGAAAACTTCAACCTTTTATCAAAGAAGAGGCTTTAGTTGGTATGAACGATGAAGTTCTTCCCTGCATAGATGAGCAGTTTTCTAACTTATTATTGAATGATGATGGTTCAAATTTTTCTAGCAAATCGTTCCATATGGAAGGATGCTAA
>Glyma07g32971.1 sequence type=predicted peptide gene model=Glyma07g32971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPGSRNPMWGGGKGEVFNFSVDELPVQINVTIYDWYKCRDNAILGSVTVPLKSNGQTGPVWHTLDSPSGKVSLQIETKKLPANVSRIHCYGEATVVHQKPGPLQTIFDLHSDEVIDHRYICALETSFLYQGDMYVSAWNICFYSNMFSKEMKIQRSELALINPAITIILRKGAGGHGVPPFSPLGSPDGRVGCMFASFVDRNKALENLQRASKNFHEILEAGKENAEPELRALSDSARGSKALDKALEESMPKTGKLQPFIKEEALVGMNDEVLPCIDEQFSNLLLNDDGSNFSSKSFHMEGC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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