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Report for Sequence Feature Glyma07g32941

Feature Type:gene_model
Chromosome:Gm07
Start:37801667
stop:37825811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g32941
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59660AT Annotation by Michelle Graham. TAIR10: C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1032 KOG Uncharacterized conserved protein, contains GRAM domain JGI ISS
PTHR23319Panther UNCHARACTERIZED JGI ISS
PF00168PFAM C2 domain JGI ISS
PF02893PFAM GRAM domain JGI ISS
UniRef100_G7JNL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: GRAM domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JNL7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023384BAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023384BA related cluster n=1 Tax=unknown RepID=UPI00023384BA SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g32941
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g32941 not represented in the dataset
Glyma07g32941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g32941
ParalogEvidenceComments
Glyma02g15550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g32941 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g207700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g32941
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g32941
>Glyma07g32941.1   sequence type=CDS   gene model=Glyma07g32941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGTGACCGTTGATTCCGCGCTCTTCGCGTTTCTCTTCCCCTCGGCGTGGGAAATCAAAGTCGCCGTCGCCGCGTCCGTCTTCGTCATCCTCGCCTACCGCTTCTTCGCCGTCCGGACCGGATACGCCGATCCGTCGCTCACCGACAATTCCGCCGGTGATGTTGCCGACGAAAAGGACAAGATGGGTCAGTCTAAAGTGGATTCTCAAGCCAGTTTGGCGTATCTGATCAAGTTAGAACTGTTGGCTGCCAAGAATCTTGTCGGTGCAAACTTAAATGGAACATCGGATCCTTATGCTATAATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGTGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCTGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGAAATGCTTCCAGGATAAATGGTTATGGGGGAGCCAACCCTCGAAGAAGGATGCCTCCCTTGGAAAGCCAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAAACTATATTTGGTCTTCATCCAGATGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCATATTTGTTTCCATTCCAATGTCTTCTCTAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATACGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCCGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATATGTTTGCATCATTTTGGAACAGGAACCATGCATTAAGAAATCTACAGCGTGCAGCAAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCTGCGTGCACATAGTAGTTCTGTCAGAGGAAATAAGATACTGGACAAGGCTCCTGAAGAAAGCATGCCAAAAACTGGAAGACTTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGTATATACAATGAAGTTTTTCCCTGCACAGCTGAGCAGTTTTTTAACTTGTTATTGAATGATGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGTCAGTGGCATACAGCAGATGAATACGATGGACAAGTCCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCCATGTGCCCTCCGGACACAGCCATGACAGAGTGGCAACATCATGTTCTATCACTAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAACAGGCACATGATGTTCCATTTGGATCCTACTTTGAGGTACACTGTAAATGGAGCTTGGAGACAATTAATGAAATCTCATGTACTCTGGACATAAAAGTCGGTGCGCATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGGTCGTATATAAAATCAAATACTCCTAATGATGAGGACGATAAGGCCTCTTCGCCCCCTGCAGCGACAGTGGAAAGCTAA
Predicted protein sequences of Glyma07g32941
>Glyma07g32941.1   sequence type=predicted peptide   gene model=Glyma07g32941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVTVDSALFAFLFPSAWEIKVAVAASVFVILAYRFFAVRTGYADPSLTDNSAGDVADEKDKMGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNASRINGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESELRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSLDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINEISCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPAATVES*






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