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Report for Sequence Feature Glyma07g32790

Feature Type:gene_model
Chromosome:Gm07
Start:37696887
stop:37704442
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g32790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43750AT Annotation by Michelle Graham. TAIR10: O-acetylserine (thiol) lyase B | chr2:18129604-18132322 REVERSE LENGTH=392 SoyBaseE_val: 0ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006535GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004124GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine synthase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG1252 KOG Cystathionine beta-synthase and related enzymes JGI ISS
PTHR10314Panther PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY JGI ISS
PTHR10314:SF8Panther THREONINE DEHYDRATASE JGI ISS
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI ISS
UniRef100_C6TDJ4UniRef Annotation by Michelle Graham. Best UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=C6TDJ4_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6TDJ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=C6TDJ4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g32790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g32790 not represented in the dataset
Glyma07g32790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g32790
ParalogEvidenceComments
Glyma02g15640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g32790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g206800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g32790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g32790
>Glyma07g32790.2   sequence type=transcript   gene model=Glyma07g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAGTTGGTTATTGTCATTTTTATCATTTATTATAGCCAACTTGTCCCTTTACCCTTCCAACATACACTTCTTCTATTGCGACCCATTTTTCCAATCCACAATCGTGGGAGTGAGCGAACAACTACAAAGGGATATTAGATACTATTGTGAGTGAGTGCGTGCGATTCATTGTGTTTGTGTAGTAGTGACTTTGGGTTGGGTTTCGTCTCAACTCAACAAACGTCGTCGTTCTGCATTTCCCAACCTTCCTCCAATGGCTTCTGCTTCCTTAATCAACTCGTTGACTTGTTCTTCGCGTGCTCCCACTCAGCACTGTTCCACTTTCACCCGCACCACCGCCGCCACGTCACTGAGACAATTTAACAGCCACTGTCGGAGACCACTCGCGACGAGGATCTCGCCGCCTTCCACCGTTGTCTGCAAAGCTGTCTCCGTTAAGCCCCAAACCGAAATCGAAGGTCTCAACATTGCTGAAGATGTCACCCAGCTCATAGGGAAAACGCCAATGGTTTACCTGAACAATATCGTGAAGGGTTCTGTGGCCAATATTGCTGCCAAGCTTGAGATTATGGAGCCCTGTTGTAGTGTAAAGGACAGGATTGGTTTTAGTATGATAAATGATGCTGAGCAGAGAGGAGCTATAACACCTGGGAAGAGTATATTGGTGGAACCTACTAGCGGCAACACCGGAATTGGTCTTGCCTTTATAGCAGCTTCAAGAGGTTATAAACTCATTTTGACAATGCCTGCTTCAATGAGTTTAGAAAGACGAGTTCTCTTGAAAGCATTTGGGGCCGAGCTTGTTTTGACTGATGCAGCAAAGGGCATGAATGGAGCAGTTCAAAAAGCTGAAGAAATTTTAAAAAGTACCCCCAATGCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGATTCATTATGAGACAACTGGCCCAGAGATATGGGAAGATACAAGAGGAAAGATAGATATTTTAGTTGCAGGAATTGGAACTGGTGGAACTGTTTCTGGAGTTGGCCAATTCCTAAAACAACAAAATCCAAAAATACAGGTTATTGGTGTAGAGCCTCTGGAAAGCAACATACTTACTGGCGGAAAGCCAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATCAAGATGTGCTTGATGAAGTTATAGCGATATCAAGTGATGAAGCAGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCTTCAGGAGCTGCTGCTGCAGCTGCTTTGAAGGTTGGAAAGAGGCCTGAGAATGCAGGTTGTCTTCCCAAGCTTTGGTGAAAGATATTTGTCTACTATTCTTTTCCAGTCAATTCGGGAAGAATGCGAGAAAATGCAACCTGAGCCATGAATTGACTTTGCTTGTTAATGTTTCATACTCATTCTCCACGAGTATCTGTATGTAAATGACAGTGTGACATGTCCATGTTATGTCCGTGTTTCTCATTTTTGACACTCAAGAAATTAGATAACTGTGTAAAGGTCATTGACTTGACTTACAGCCAGATCAATGGCCCTTGATTGAATAAGTTTTTTTCCTTCTCTCTTTGGGCTAAAACTTTTAGATGTAGTAGGAATTACTGGCATTGCTCTTCTTTTTGTATGGCAGCGTAAGAAATTTCTGTCTAATGTTCGCTATTAAAAAATAATTGATGAAACAGTTTATCTGTTGCATTTTGTGCACCCCCCTCCTCTAG
Coding sequences of Glyma07g32790
>Glyma07g32790.1   sequence type=CDS   gene model=Glyma07g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTTCCTTAATCAACTCGTTGACTTGTTCTTCGCGTGCTCCCACTCAGCACTGTTCCACTTTCACCCGCACCACCGCCGCCACGTCACTGAGACAATTTAACAGCCACTGTCGGAGACCACTCGCGACGAGGATCTCGCCGCCTTCCACCGTTGTCTGCAAAGCTGTCTCCGTTAAGCCCCAAACCGAAATCGAAGGTCTCAACATTGCTGAAGATGTCACCCAGCTCATAGGGAAAACGCCAATGGTTTACCTGAACAATATCGTGAAGGGTTCTGTGGCCAATATTGCTGCCAAGCTTGAGATTATGGAGCCCTGTTGTAGTGTAAAGGACAGGATTGGTTTTAGTATGATAAATGATGCTGAGCAGAGAGGAGCTATAACACCTGGGAAGAGTATATTGGTGGAACCTACTAGCGGCAACACCGGAATTGGTCTTGCCTTTATAGCAGCTTCAAGAGGTTATAAACTCATTTTGACAATGCCTGCTTCAATGAGTTTAGAAAGACGAGTTCTCTTGAAAGCATTTGGGGCCGAGCTTGTTTTGACTGATGCAGCAAAGGGCATGAATGGAGCAGTTCAAAAAGCTGAAGAAATTTTAAAAAGTACCCCCAATGCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGATTCATTATGAGACAACTGGCCCAGAGATATGGGAAGATACAAGAGGAAAGATAGATATTTTAGTTGCAGGAATTGGAACTGGTGGAACTGTTTCTGGAGTTGGCCAATTCCTAAAACAACAAAATCCAAAAATACAGGTTATTGGTGTAGAGCCTCTGGAAAGCAACATACTTACTGGCGGAAAGCCAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATCAAGATGTGCTTGATGAAGTTATAGCGATATCAAGTGATGAAGCAGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCTTCAGGAGCTGCTGCTGCAGCTGCTTTGAAGGTTGGAAAGAGGCCTGAGAATGCAGGCAAGCTTATTGGGGTTGTCTTCCCAAGCTTTGGTGAAAGATATTTGTCTACTATTCTTTTCCAGTCAATTCGGGAAGAATGCGAGAAAATGCAACCTGAGCCATGA

>Glyma07g32790.2   sequence type=CDS   gene model=Glyma07g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTTCCTTAATCAACTCGTTGACTTGTTCTTCGCGTGCTCCCACTCAGCACTGTTCCACTTTCACCCGCACCACCGCCGCCACGTCACTGAGACAATTTAACAGCCACTGTCGGAGACCACTCGCGACGAGGATCTCGCCGCCTTCCACCGTTGTCTGCAAAGCTGTCTCCGTTAAGCCCCAAACCGAAATCGAAGGTCTCAACATTGCTGAAGATGTCACCCAGCTCATAGGGAAAACGCCAATGGTTTACCTGAACAATATCGTGAAGGGTTCTGTGGCCAATATTGCTGCCAAGCTTGAGATTATGGAGCCCTGTTGTAGTGTAAAGGACAGGATTGGTTTTAGTATGATAAATGATGCTGAGCAGAGAGGAGCTATAACACCTGGGAAGAGTATATTGGTGGAACCTACTAGCGGCAACACCGGAATTGGTCTTGCCTTTATAGCAGCTTCAAGAGGTTATAAACTCATTTTGACAATGCCTGCTTCAATGAGTTTAGAAAGACGAGTTCTCTTGAAAGCATTTGGGGCCGAGCTTGTTTTGACTGATGCAGCAAAGGGCATGAATGGAGCAGTTCAAAAAGCTGAAGAAATTTTAAAAAGTACCCCCAATGCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGATTCATTATGAGACAACTGGCCCAGAGATATGGGAAGATACAAGAGGAAAGATAGATATTTTAGTTGCAGGAATTGGAACTGGTGGAACTGTTTCTGGAGTTGGCCAATTCCTAAAACAACAAAATCCAAAAATACAGGTTATTGGTGTAGAGCCTCTGGAAAGCAACATACTTACTGGCGGAAAGCCAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATCAAGATGTGCTTGATGAAGTTATAGCGATATCAAGTGATGAAGCAGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCTTCAGGAGCTGCTGCTGCAGCTGCTTTGAAGGTTGGAAAGAGGCCTGAGAATGCAGGTTGTCTTCCCAAGCTTTGGTGA
Predicted protein sequences of Glyma07g32790
>Glyma07g32790.1   sequence type=predicted peptide   gene model=Glyma07g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASLINSLTCSSRAPTQHCSTFTRTTAATSLRQFNSHCRRPLATRISPPSTVVCKAVSVKPQTEIEGLNIAEDVTQLIGKTPMVYLNNIVKGSVANIAAKLEIMEPCCSVKDRIGFSMINDAEQRGAITPGKSILVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMNGAVQKAEEILKSTPNAYMLQQFDNPSNPKIHYETTGPEIWEDTRGKIDILVAGIGTGGTVSGVGQFLKQQNPKIQVIGVEPLESNILTGGKPGPHKIQGIGAGFVPRNLDQDVLDEVIAISSDEAVETAKQLALQEGLLVGISSGAAAAAALKVGKRPENAGKLIGVVFPSFGERYLSTILFQSIREECEKMQPEP*

>Glyma07g32790.2   sequence type=predicted peptide   gene model=Glyma07g32790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASLINSLTCSSRAPTQHCSTFTRTTAATSLRQFNSHCRRPLATRISPPSTVVCKAVSVKPQTEIEGLNIAEDVTQLIGKTPMVYLNNIVKGSVANIAAKLEIMEPCCSVKDRIGFSMINDAEQRGAITPGKSILVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMNGAVQKAEEILKSTPNAYMLQQFDNPSNPKIHYETTGPEIWEDTRGKIDILVAGIGTGGTVSGVGQFLKQQNPKIQVIGVEPLESNILTGGKPGPHKIQGIGAGFVPRNLDQDVLDEVIAISSDEAVETAKQLALQEGLLVGISSGAAAAAALKVGKRPENAGCLPKLW*






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