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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59770 | AT | Annotation by Michelle Graham. TAIR10: sacI homology domain-containing protein / WW domain-containing protein | chr3:22079281-22085674 REVERSE LENGTH=1630 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0046488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol metabolic process | SoyBase | N/A | ISS |
| GO:0048015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol-mediated signaling | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0042578 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity | SoyBase | N/A | ISS |
| PTHR11200 | Panther | INOSITOL 5-PHOSPHATASE | JGI | ISS | |
| PTHR11200:SF8 | Panther | SYNAPTOJANIN-RELATED | JGI | ISS | |
| PF00397 | PFAM | WW domain | JGI | ISS | |
| PF02383 | PFAM | SacI homology domain | JGI | ISS | |
| UniRef100_G7JNP0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAC domain protein n=1 Tax=Medicago truncatula RepID=G7JNP0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KLU6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KLU6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g32780 not represented in the dataset |
Glyma07g32780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g15650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g206500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g32780.2 sequence type=CDS gene model=Glyma07g32780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCACCGGGTGCTTTGAGGGACACGTCAGTGATCGTGGTGACGCTGGACTCCGACGAGGTCTTCATCGTCGCGAGCCTCTGTACCAGAACCGACACTCAGGTAATCTACGTCGATCCGACCACTGGCGCGCTCCGCCACGAGGCCAAGTTAGGGTTCGATCTGTTCAAGTCGCAGGGCGAGGCCTTGGATTTCGTCACCAACGGATCGCGGTTTGCCTGCAGGAGCAGGACGCTCGCGAGGGCGATTCTAGGCTATGCCGCGTTGGGGAACGTCGCGCTGCTCCTCGTCGCGACGAGGCTGGTCGCGAGTGTTTCCAATCTGCCCGGCGGTGGGTGCGTGTACACGGTTGCGGAGAGCCAGTGGATCAGGATTCCGCTGCAGAACGCGGTGGCGCAGGGGAAGGGAGAGGTGAAGAACGTGCAGGAGTTGACGGAGCTTGATATCGATGGGAAGCATTACTTCTGCGAGACGAGGGACGTTACGCGGCCTTTTCCGAGCAGGATGCCGGTGAACGAACCGGATCAGGAGTTTGTTTGGAACGCGTGGTTTTCTACTCCGTTTGTTGAGATTGGCTTGCCGCGGCATTGTGTCACGCTACTGCAGGGGTTTGCAGAATGTCGAAGTTTTGGAAGCTCGGGTCAACTAGAAGGTGTTGTTGCTCTCACAGCTCGTCGGAGCAGACTACACCCGGGTACTCGATATTTAGCAAGGGGGCTAAATTCATGTTTCAGTACAGGAAATGAAGTGGAGTGTGAGCAACTTGTATGGATTCCCAAACGAGCTGGTCAAAGTGTACCTTTGAACAGATATGTATGGCGAAGAGGCACTATTCCTATCTGGTGGGGTGCAGAACTGAAAATCACAGCTGCAGAAGCTGAAATTTATGTTTCAGATTGTGATCCTTATAAAGGAAGTGTACAGTATTATGAAAGACTGAGTAAGAGATATGATGCTCGTAATATGGATATACGTGCAGGTGAGAATTCAAACCGAAAAGCTTTGGTTCCCATTGTATGCATTAACTTGCTTCGAAATGGGGAAGGAAAGTCAGAGTCCCTTTTGGTTCAACATTTCGAGGAGTCTATAAACTTTATTAGATCAACTGGGAAGCTTCCGAATACTCGGGTCCATTTGATAAACTATGACTGGCATGCCAGTGTGAAATTAAAAGGTGAACAGATGACAATTGAAGGGTTATGGAAACTTCTAAAAGCACCCACTCTATCTATAGGTATATCTGAAGGGGATTACTTGCCTTCACGACAACGAATAAATGATTGTCAAGGTGAAGTTATCTACAATGATGATTTTGAAGGTGCATTCTGTTTAAGAACAAATCAAAATGGGATTGTACGTTTTAACTGTGCTGATTCTCTTGATAGGACCAATGCTGCTAGTTTTTTTGGTTGCCTCCAAGTATTCACAGAGCAATGTAGACGGCTGGGGATATCACTTGATAGTGATCTGGCATTTGGTTATCAATCGATGAATAATAATTATGGTGGATATACTGCTCCACTGCCACCTGGGTGGGAGAAGCGTTCTGATGCCGTGACAGGAAAAACATATTATATTGATCATAATACCAGAACCACCACATGGATGCATCCATGTCCTGATAAACCATGGAAGAGATTTGATATGACATTTGAGGAGTTCAAGAGATCAACAATTTTGTCTCCTGTATCTCAACTAGCTGACCTTTTCCTACTTGCTGGGGATATTCATGCTACTCTTTACACTGGATCCAAAGCAATGCACAGCCAAATACTTAGCATATTCAATGAAGATACGGGAGGAAAGTTTAAACAGTTTTCTGCTGCACAAAATGTGAAAATCACTTTGCAAAGAAGATATAAGAATGCAGTTGTGGATAGCTCTCGTCAAAAGCAATTAGAAATGTTTCTTGGAATGAGGCTTTTCAAGCATCTTCCATCAATTTCCCTTCAACCTCTACATGTACCGTCTCGGCCGTCTGGTTTTGTTCTCAAACCAATTGCAAACTTATTTCCTATTTCTGGTGGTGAAGCTAGCCTTCTGAGTTTTAAAAGAAAAGGCCTAGTTTGGATTTGTCCACAACCTGCAGATGTAGTTGAAATCTTTATTTATCTTGGTGAACCTTGCCATGTTTGTCAGCTTCTTCTCACAATATCCCATGGTGCAGATGATTCAACTTATCCATCAACAGTTGATGTACGGACAGGGCGCCATTTAGATGGGCTTAAACTGGTCTTAGAGGGTGCTTCTATACCACAATGTGCGAGTGGGACCAACCTTTTAATACCCTTACCTGGGGCAATTAATGCCGAAGACATGGCTATAACTGGAGCAAATTCTCATCTACATGCCCAAGATGCATCACCCTTATCATTACTGTATGATTTTGAGGAACTCGAGGGAGAGTGGGATTTCCTTACTCGTGTAGTTGCGCTAACCTTTTATCCAACTGTTTCTGGAAGGAAACCATTAACGCTTGGCGAGATTGAAATCCTTGGAGTTTCTCTTCCGTGGAGTGATGTATTTACTAATGAAGGCCCTGGTACAAGATTAGTTGAGCATGTCAAGAAGTTTGAAGAGGAGCTTAATCCCTTTGTATCTGATTCGGATACGAATCCATTTAACTCTTCATCCTCAGAAAAAGCGTCACCACCCAAACAAGGAGGCACTTCTGCTGACCTTTTCATTGACCTCCTGTCTGGGGAGGACCCGCTTCCACACCCACTTGCGCAACCAGTTACTGAAAATATTGTCTACCAGGAAAATGACCCACTTGATTTCTTGGACCTAAGTGTTGAAAATCATAGTGCCAAAATCAATGGTAAAGTTTCATCAGAAGATGCCAGACATGCAGAAAGTAGTGCTGAACAATATTTAAAGTGCCTTAAAACTCTTGCAGGGCCAAGTCTGCAAAGAAAAATCAACTTCATTGAAGCCATTAAACTTGAGATTGAACGCCTTAAGTTGAATCTTTCTGCTGCTGAAAGGGATAGAGCCCTGCTATCTGTTGGAATGGATCCTGCAACCATAAATCCTAATACACTGCTCGATGAAGCTTACACGGGAAGATTATCTAAAGTTGCAAACAATCTTGCCTTGCTTGGAGAAGCTTCTCTTGAAGATAAACTTGTTGGTGCTATTGGTCTTGGGACTGTTGATGATAATCCAATAGATTTCTGGAATATTATCAGAATTGGGGAAACCTGTTCTGGTGGTAAGTGTGAGGTGCGTGCTGAAATTAGAAAGGCAGTTCATTCATCTAACACAATGTCATCTGCTGGTGCTTCAGAAGCTGTATTCTTGTGTTCTCAATGCGAAAGGAAGGCTTGCAGAGTTTGCTGTGCTGGGAGGGGGGCATTTCTGCTTGTAGGATATAATTCAAGAGAGGTCCAAGTTGACTTTCCTGTAAATCGTTTATTAGCTCAGGATGGTATAATTTGTAAACGGTGCTGCCAGGATATTGTGCTTCATGCATTGATTTTGGACTGTGTGAGGGTTCTGATTAGCTTTCGAAGAGCAGAACGTGTGGAAAAGGCTGCTTACAATGCTTTGAAGCAAATCATTGGATCATCTTGGGATTGTCATCTAGAAAAGAAACAGGTCCCTGATAGCAAGTCTGCTGGCAAAGCAGTACAGTTGTTACTGAACGGATATGAATCCCTGGCTGAATTTCCTTTTGGCAGCTTTTTACACCCGGTTGAAACAGCAGCAGATTCTGCTCCATTTTTGTCATTGCTTGCTCCATTAAATTCTGGTTTGCGGCTATCATATTGGAAAGCACCATCTAGTGCCTCCTCTGTTGAATTTGGAATTGTCCTTGGTAATATTTCTGATGTTAGTGGGATTATATTGATTGTCAGCCCATGTGGCTACTCTATGGCTGATGCTCCAATTGTGCAAATTTGGGCAAGTAACAAAATACACAAGGAGGAAAGATCATTAATGGGAAAATGGGATCTGCAATCTATGATTAAAGCTTCCTCAGAATTATATGGACCTGAAAAGTCAGGAACAGAGCATAAAGTGCCTAGACACGTAAAGTTTCCCTTCACGAACTCTGTTCAGTGCCGCATAATTTGGATAAGTTTACGCCTTCAGCGACCTGGTTCAAGTTCTATAAATATTGGAAATGACTTCAATCTGTTGTCTCTAGATGAGAACCCTTTTGCACAAGAAACTCAACGGGCCTCATTCGGAGGATCTGCTGAGAGCGAACCCTGTCTTCATGCCAAGAGGATTTTAGTTGTTGGAAGCCCCATTAGAAAGGAATTTGATCTTAAGCCACAACAAAGCTCTGACCAGTTGACCCTGACAGGGTGGTTGGAAAGAGCTCCACAGCTTAGTAGATTCAAGGTTCCAATTGAGGCTGCTGAAAGATTGATGGACAATGATCTTGTCCTGGAGCAGTATCTGTCTCCTGCTTCTCCCTTGCTTGCCGGATTTCGTCTTGATGCCTTTAGTGCAATCAAGCCTCGGGTTACCCATTCACCTTTTTCAGATGTACATAGCAAAAATTTTCCATCCCTTGTGGATGACAGATACATCACTCCAGCTGTATTGTATATTCAAGTATCTGTTCTCCAGGAAAACCATAGCATGGTTACCATTGGTCAGTACCGATTACCAGAGGCCAGAGCTGGAACACCAATGTACTTTGATTTCTCTAGCCAGATACAAACTCGCAGAATTTGCTTCAAACTAGTTGGAGATGTTGCAGCTTTTACGGATGACCCATCAGAACAAGATGATTCTGGCACTAGAATTTCTCCACTGGCAGTAGGGCTATCTTTGTCTAATAGAATTAAGGTGTATTACTATGCTGATCCATATGACCTTGGGAAATGGGCTAGCCTGGGGGCAGTTTAA
>Glyma07g32780.2 sequence type=predicted peptide gene model=Glyma07g32780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESPGALRDTSVIVVTLDSDEVFIVASLCTRTDTQVIYVDPTTGALRHEAKLGFDLFKSQGEALDFVTNGSRFACRSRTLARAILGYAALGNVALLLVATRLVASVSNLPGGGCVYTVAESQWIRIPLQNAVAQGKGEVKNVQELTELDIDGKHYFCETRDVTRPFPSRMPVNEPDQEFVWNAWFSTPFVEIGLPRHCVTLLQGFAECRSFGSSGQLEGVVALTARRSRLHPGTRYLARGLNSCFSTGNEVECEQLVWIPKRAGQSVPLNRYVWRRGTIPIWWGAELKITAAEAEIYVSDCDPYKGSVQYYERLSKRYDARNMDIRAGENSNRKALVPIVCINLLRNGEGKSESLLVQHFEESINFIRSTGKLPNTRVHLINYDWHASVKLKGEQMTIEGLWKLLKAPTLSIGISEGDYLPSRQRINDCQGEVIYNDDFEGAFCLRTNQNGIVRFNCADSLDRTNAASFFGCLQVFTEQCRRLGISLDSDLAFGYQSMNNNYGGYTAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWMHPCPDKPWKRFDMTFEEFKRSTILSPVSQLADLFLLAGDIHATLYTGSKAMHSQILSIFNEDTGGKFKQFSAAQNVKITLQRRYKNAVVDSSRQKQLEMFLGMRLFKHLPSISLQPLHVPSRPSGFVLKPIANLFPISGGEASLLSFKRKGLVWICPQPADVVEIFIYLGEPCHVCQLLLTISHGADDSTYPSTVDVRTGRHLDGLKLVLEGASIPQCASGTNLLIPLPGAINAEDMAITGANSHLHAQDASPLSLLYDFEELEGEWDFLTRVVALTFYPTVSGRKPLTLGEIEILGVSLPWSDVFTNEGPGTRLVEHVKKFEEELNPFVSDSDTNPFNSSSSEKASPPKQGGTSADLFIDLLSGEDPLPHPLAQPVTENIVYQENDPLDFLDLSVENHSAKINGKVSSEDARHAESSAEQYLKCLKTLAGPSLQRKINFIEAIKLEIERLKLNLSAAERDRALLSVGMDPATINPNTLLDEAYTGRLSKVANNLALLGEASLEDKLVGAIGLGTVDDNPIDFWNIIRIGETCSGGKCEVRAEIRKAVHSSNTMSSAGASEAVFLCSQCERKACRVCCAGRGAFLLVGYNSREVQVDFPVNRLLAQDGIICKRCCQDIVLHALILDCVRVLISFRRAERVEKAAYNALKQIIGSSWDCHLEKKQVPDSKSAGKAVQLLLNGYESLAEFPFGSFLHPVETAADSAPFLSLLAPLNSGLRLSYWKAPSSASSVEFGIVLGNISDVSGIILIVSPCGYSMADAPIVQIWASNKIHKEERSLMGKWDLQSMIKASSELYGPEKSGTEHKVPRHVKFPFTNSVQCRIIWISLRLQRPGSSSINIGNDFNLLSLDENPFAQETQRASFGGSAESEPCLHAKRILVVGSPIRKEFDLKPQQSSDQLTLTGWLERAPQLSRFKVPIEAAERLMDNDLVLEQYLSPASPLLAGFRLDAFSAIKPRVTHSPFSDVHSKNFPSLVDDRYITPAVLYIQVSVLQENHSMVTIGQYRLPEARAGTPMYFDFSSQIQTRRICFKLVGDVAAFTDDPSEQDDSGTRISPLAVGLSLSNRIKVYYYADPYDLGKWASLGAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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