Glyma07g32560 - SoyBase

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Report for Sequence Feature Glyma07g32560

Feature Type:	gene_model
Chromosome:	Gm07
Start:	37430798
stop:	37434962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g32560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20575	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein \| chr1:7126987-7128677 REVERSE LENGTH=246	SoyBase	E_val: 2.00E-156	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0060359	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ammonium ion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0033185	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: dolichol-phosphate-mannose synthase complex	SoyBase	N/A	ISS
GO:0004582	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dolichyl-phosphate beta-D-mannosyltransferase activity	SoyBase	N/A	ISS
GO:0004686	GO-mf	Annotation by Michelle Graham. GO Molecular Function: elongation factor-2 kinase activity	SoyBase	N/A	ISS
KOG2978	KOG	Dolichol-phosphate mannosyltransferase	JGI		ISS
PTHR10859	Panther	GLYCOSYLTRANSFERASE RELATED	JGI		ISS
PF00535	PFAM	Glycosyl transferase family 2	JGI		ISS
UniRef100_G7IHP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichol-phosphate mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7IHP6_MEDTR	SoyBase	E_val: 6.00E-162	ISS
UniRef100_I1KLS1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KLS1_SOYBN	SoyBase	E_val: 9.00E-178	ISS

Expression Patterns of Glyma07g32560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g32560 not represented in the dataset	Glyma07g32560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g32560

Paralog	Evidence	Comments
Glyma13g24040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g32560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g204400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g32560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g32560

Limit To All Plant Sequences

>Glyma07g32560.3   sequence type=transcript   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTAATTATAATTTAAATACAAATAAAAAAAAAGTTTTTAGTAGCTGACATTGTTTTTGGCCCGTTAATTTCCGAGCAATCGTTCGCCGTCGCTTGAAGCTGCTGCTGCTGCTGCCCTTTGTGAAGTGTTTGTTCTCCGTCATCTCGCGTCGTTAGTTCATTGAACTCACTGCATTGAGTGGATTTGGTACAAGTTGAGTTCAGAATGGATGGGCGACATCAGAAGCAAAAAAACAAGTACAGTATAATTGTTCCTACATATAATGAGCGTCTCAACATTGGTCTCATTGTTTACCTCATCTTCAAGCACCTTGGGGATGCTGATTTTGAAATTATTATTGTGGACGATGGGAGTCCTGATGGTACTCAGGATGTTGTAAAACAACTGCAGCAAGTTTATGGAGAAGATCGGATTCTGTTAAGAGCACGCCCTAGGAAGTTGGGTTTGGGAACTGCTTATATTCATGGCATGAAGCATGCATCTGGAAATTTTGTTGTCATCATGGATGCTGATCTATCTCACCATCCAAAATATTTGCCAAACTTCATTAGAAAGCAGTCGGAGACTGGTGCTGATATAGTTACAGGGACTCGTTATGTTAAAGGTGGTGGTGTGCATGGATGGAATCTTATGCGTAAGCTAACTAGCAGGGGGGCAAATGTTCTTGCACAAACACTTTTATGGCCTGGTGTCTCAGATTTGACAGGATCTTTTAGACTTTATAGGAAATCAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAAATGATAGTACGGGCATCCAGAAAAGGGTACCATATTGAAGAGGTCCCAATCACATTTGTTGATAGAGTATTTGGAAGTTCAAAGCTTGGTGGATCAGAGATTGTTGAATACCTAAAGGGCCTAGCTTATCTCTTGGTGACAACATAAAAGGATAAATCATAACAACTCGATATACCTTACATTTTGGGGAAGAAAAAGAGATATAAATTTTGTTGTTCATTTACTTATATATTGAGGACATCAAATTTACTGCTAGAATCTCCGTAACTTTGCCTTTTGAAGTTAGCAGGAAGCATCTGTATGATTCTCTCTGTTTATAACTGTGTGAGGCTTTACAATTTTTGGTTTTGCTGAACTTGTAACTTAAGCTGAGGTCTTCCTACTTTTGTCCCTTTTAGTTCTATTCGCCAAGACGCCAACCAATACTTGACCCCTTAGATGGAAATACAACTTATTGGATCTGTCTCTCTCTCTCTCTCCCCTCTTTTATATTGGAGATCTCTTGAACATGAGAAATTTTTGGGTAAACCTGAACCATAGTGGGGTTTTCAGTGAATACCATGCCACCTTACTTTGGTGGCAGGCAGTGGTCTGATTCCTTTTGATATAATTTGTTCTTAATGCCTACTCTCCATGAATATTATTTTTGT

>Glyma07g32560.4   sequence type=transcript   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATAATTTAAATACAAATAAAAAAAAAGTTTTTAGTAGCTGACATTGTTTTTGGCCCGTTAATTTCCGAGCAATCGTTCGCCGTCGCTTGAAGCTGCTGCTGCTGCTGCCCTTTGTGAAGTGTTTGTTCTCCGTCATCTCGCGTCGTTAGAATGGATGGGCGACATCAGAAGCAAAAAAACAAGTACAGTATAATTGTTCCTACATATAATGAGCGTCTCAACATTGGTCTCATTGTTTACCTCATCTTCAAGCACCTTGGGGATGCTGATTTTGAAATTATTATTGTGGACGATGGGAGTCCTGATGGTACTCAGGATGTTGTAAAACAACTGCAGCAAGTTTATGGAGAAGATCGGATTCTGTTAAGAGCACGCCCTAGGAAGTTGGGTTTGGGAACTGCTTATATTCATGGCATGAAGCATGCATCTGGAAATTTTGTTGTCATCATGGATGCTGATCTATCTCACCATCCAAAATATTTGCCAAACTTCATTAGAAAGCAGTCGGAGACTGGTGCTGATATAGTTACAGGGACTCGTTATGTTAAAGGTGGTGGTGTGCATGGATGGAATCTTATGCGTAAGCTAACTAGCAGGGGGGCAAATGTTCTTGCACAAACACTTTTATGGCCTGGTGTCTCAGATTTGACAGGATCTTTTAGACTTTATAGGAAATCAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAAATGATAGTACGGGCATCCAGAAAAGGGTACCATATTGAAGAGGTCCCAATCACATTTGTTGATAGAGTATTTGGAAGTTCAAAGCTTGGTGGATCAGAGATTGTTGAATACCTAAAGGGCCTAGCTTATCTCTTGGTGACAACATAAAAGGATAAATCATAACAACTCGATATACCTTACATTTTGGGGAAGAAAAAGAGATATAAATTTTGTTGTTCATTTACTTATATATTGAGGACATCAAATTTACTGCTAGAATCTCCGTAACTTTGCCTTTTGAAGTTAGCAGGAAGCATCTGTATGATTCTCTCTGTTTATAACTGTGTGAGGCTTTACAATTTTTGGTTTTGCTGAACTTGTAACTTAAGCTGAGGTCTTCCTACTTTTGTCCCTTTTAGTTCTATTCGCCAAGACGCCAACCAATACTTGACCCCTTAGATGGAAATACAACTTATTGGATCTGTCTCTCTCTCTCTCTCCCCTCTTTTATATTGGAGATCTCTTGAACATGAGAAATTTTTGGGTAAACCTGAACCATAGTGGGGTTTTCAGTGAATACCATGCCACCTTACTTTGGTGGCAGGCAGTGGTCTGATTCCTTTTGATATAATTTGTTCTTAATGCCTACTCTCCATGAATATTATTTTTGT

Coding sequences of Glyma07g32560

Limit To All Plant Sequences

>Glyma07g32560.1   sequence type=CDS   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGCGACATCAGAAGCAAAAAAACAAGTACAGTATAATTGTTCCTACATATAATGAGCGTCTCAACATTGGTCTCATTGTTTACCTCATCTTCAAGCACCTTGGGGATGCTGATTTTGAAATTATTATTGTGGACGATGGGAGTCCTGATGGTACTCAGGATGTTGTAAAACAACTGCAGCAAGTTTATGGAGAAGATCGGATTCTGTTAAGAGCACGCCCTAGGAAGTTGGGTTTGGGAACTGCTTATATTCATGGCATGAAGCATGCATCTGGAAATTTTGTTGTCATCATGGATGCTGATCTATCTCACCATCCAAAATATTTGCCAAACTTCATTAGAAAGCAGTCGGAGACTGGTGCTGATATAGTTACAGGGACTCGTTATGTTAAAGGTGGTGGTGTGCATGGATGGAATCTTATGCGTAAGCTAACTAGCAGGGGGGCAAATGTTCTTGCACAAACACTTTTATGGCCTGGTGTCTCAGATTTGACAGGATCTTTTAGACTTTATAGGAAATCAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAAATGATAGTACGGGCATCCAGAAAAGGGTACCATATTGAAGAGGTCCCAATCACATTTGTTGATAGAGTATTTGGAAGTTCAAAGCTTGGTGGATCAGAGATTGTTGAATACCTAAAGGGCCTAGCTTATCTCTTGGTGACAACATAA

>Glyma07g32560.3   sequence type=CDS   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGCGACATCAGAAGCAAAAAAACAAGTACAGTATAATTGTTCCTACATATAATGAGCGTCTCAACATTGGTCTCATTGTTTACCTCATCTTCAAGCACCTTGGGGATGCTGATTTTGAAATTATTATTGTGGACGATGGGAGTCCTGATGGTACTCAGGATGTTGTAAAACAACTGCAGCAAGTTTATGGAGAAGATCGGATTCTGTTAAGAGCACGCCCTAGGAAGTTGGGTTTGGGAACTGCTTATATTCATGGCATGAAGCATGCATCTGGAAATTTTGTTGTCATCATGGATGCTGATCTATCTCACCATCCAAAATATTTGCCAAACTTCATTAGAAAGCAGTCGGAGACTGGTGCTGATATAGTTACAGGGACTCGTTATGTTAAAGGTGGTGGTGTGCATGGATGGAATCTTATGCGTAAGCTAACTAGCAGGGGGGCAAATGTTCTTGCACAAACACTTTTATGGCCTGGTGTCTCAGATTTGACAGGATCTTTTAGACTTTATAGGAAATCAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAAATGATAGTACGGGCATCCAGAAAAGGGTACCATATTGAAGAGGTCCCAATCACATTTGTTGATAGAGTATTTGGAAGTTCAAAGCTTGGTGGATCAGAGATTGTTGAATACCTAAAGGGCCTAGCTTATCTCTTGGTGACAACATAA

>Glyma07g32560.4   sequence type=CDS   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGCGACATCAGAAGCAAAAAAACAAGTACAGTATAATTGTTCCTACATATAATGAGCGTCTCAACATTGGTCTCATTGTTTACCTCATCTTCAAGCACCTTGGGGATGCTGATTTTGAAATTATTATTGTGGACGATGGGAGTCCTGATGGTACTCAGGATGTTGTAAAACAACTGCAGCAAGTTTATGGAGAAGATCGGATTCTGTTAAGAGCACGCCCTAGGAAGTTGGGTTTGGGAACTGCTTATATTCATGGCATGAAGCATGCATCTGGAAATTTTGTTGTCATCATGGATGCTGATCTATCTCACCATCCAAAATATTTGCCAAACTTCATTAGAAAGCAGTCGGAGACTGGTGCTGATATAGTTACAGGGACTCGTTATGTTAAAGGTGGTGGTGTGCATGGATGGAATCTTATGCGTAAGCTAACTAGCAGGGGGGCAAATGTTCTTGCACAAACACTTTTATGGCCTGGTGTCTCAGATTTGACAGGATCTTTTAGACTTTATAGGAAATCAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAAATGATAGTACGGGCATCCAGAAAAGGGTACCATATTGAAGAGGTCCCAATCACATTTGTTGATAGAGTATTTGGAAGTTCAAAGCTTGGTGGATCAGAGATTGTTGAATACCTAAAGGGCCTAGCTTATCTCTTGGTGACAACATAA

Predicted protein sequences of Glyma07g32560

Limit To All Plant Sequences

>Glyma07g32560.1   sequence type=predicted peptide   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRHQKQKNKYSIIVPTYNERLNIGLIVYLIFKHLGDADFEIIIVDDGSPDGTQDVVKQLQQVYGEDRILLRARPRKLGLGTAYIHGMKHASGNFVVIMDADLSHHPKYLPNFIRKQSETGADIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYRKSVLEDIISCCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT*

>Glyma07g32560.3   sequence type=predicted peptide   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRHQKQKNKYSIIVPTYNERLNIGLIVYLIFKHLGDADFEIIIVDDGSPDGTQDVVKQLQQVYGEDRILLRARPRKLGLGTAYIHGMKHASGNFVVIMDADLSHHPKYLPNFIRKQSETGADIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYRKSVLEDIISCCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT*

>Glyma07g32560.4   sequence type=predicted peptide   gene model=Glyma07g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRHQKQKNKYSIIVPTYNERLNIGLIVYLIFKHLGDADFEIIIVDDGSPDGTQDVVKQLQQVYGEDRILLRARPRKLGLGTAYIHGMKHASGNFVVIMDADLSHHPKYLPNFIRKQSETGADIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYRKSVLEDIISCCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT*

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